SLAMF6 (SLAM Family Member 6) Gene
A key immune receptor modulating T and NK cell function, with implications in autoimmune diseases and cancer.
Gene Information Card
| Symbol | SLAMF6 |
|---|---|
| Full Name | SLAM family member 6 |
| Gene Type | protein-coding |
| Chromosomal Location | 1q23.2 |
| NCBI Gene ID | 114836 ncbi.nlm.nih.gov/gene/114836 |
| Ensembl ID | ENSG00000197142 |
| UniProt ID | Q96DU3 |
| OMIM ID | 606446 |
| HGNC ID | 21392 |
| Aliases | CD352, NTB-A, KALI, SF2000 |
Description
SLAMF6 (SLAM family member 6) is a type I transmembrane protein belonging to the signaling lymphocytic activation molecule (SLAM) family. It is expressed on hematopoietic cells, particularly T cells, NK cells, and B cells. SLAMF6 acts as a self-ligand receptor, mediating homotypic interactions that modulate immune cell signaling. It contains immunoreceptor tyrosine-based switch motifs (ITSMs) in its cytoplasmic tail, which recruit SH2 domain-containing proteins such as SAP (SH2D1A) and EAT-2 to propagate downstream signals. SLAMF6 plays critical roles in T cell activation, NK cell cytotoxicity, and humoral immunity. Dysregulation of SLAMF6 has been implicated in autoimmune diseases (e.g., systemic lupus erythematosus) and certain cancers, making it a potential therapeutic target.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Systemic Lupus Erythematosus (SLE) | SLAMF6 polymorphisms and altered expression affect T cell signaling and cytokine production, contributing to autoimmunity. | Genetic association studies (OMIM #606446; PMID: 15616575) |
| Lymphoma (e.g., NK/T cell lymphoma) | Aberrant SLAMF6 expression on malignant NK/T cells may promote tumor survival and immune evasion. | Expression studies in COSMIC and literature (PMID: 21300980) |
| Infectious Diseases (e.g., HIV) | SLAMF6 modulates CD8+ T cell exhaustion, impacting viral control. | Functional studies (PMID: 25847991) |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Spleen | 15.2 | Medium |
| Lymph Node | 12.8 | Medium |
| Blood | 10.5 | Medium |
| Bone Marrow | 8.3 | Low |
| Thymus | 7.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Jurkat (T cell leukemia) | 18.4 | High expression; used in SLAMF6 signaling studies |
| Ramos (Burkitt lymphoma) | 12.1 | Moderate expression |
| NK-92 (NK cell line) | 20.3 | High expression; relevant for NK function |
| K562 (CML) | 2.5 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| rs2295867 (intronic variant) | SNP | Allele frequency ~0.3 (global) | Associated with SLE susceptibility in some populations |
| Missense variant (e.g., p.Arg78His) | Missense | Rare (<0.01) | Potential impact on ligand binding; functional significance unclear |
| Copy number gain in lymphoma | CNV | Variable | May increase SLAMF6 expression, contributing to tumor phenotype |
Mutation functional classification
Loss of Function (LOF)
Loss-of-function mutations in SLAMF6 are rare and not well-documented. In animal models, SLAMF6 knockout leads to impaired T cell and NK cell responses, but human pathogenic loss-of-function variants have not been extensively reported.
Gain of Function (GOF)
Gain-of-function alterations, such as overexpression due to copy number gains, may enhance immune activation or contribute to tumor immune evasion. Specific activating mutations have not been characterized.
Dominant Negative (DN)
No dominant-negative mutations have been described for SLAMF6 in human disease.
View complete mutation data:
Gene Ontology (GO)
| • protein binding | • identical protein binding |
| • signal transduction | • cell adhesion |
| • immune response | • positive regulation of T cell activation |
| • natural killer cell mediated cytotoxicity | • plasma membrane |
Pathways
• SLAM family signaling pathway
• T cell receptor signaling pathway
• NK cell mediated cytotoxicity
• Immune system (Reactome)
Protein Summary
The SLAMF6 protein (also known as CD352 or NTB-A) is a 331-amino acid type I membrane glycoprotein with an extracellular region containing two immunoglobulin-like domains (V and C2 type) and a cytoplasmic tail with two ITSMs. It is expressed on the surface of T cells, NK cells, B cells, and other hematopoietic cells. SLAMF6 undergoes homophilic interactions (self-ligand) and recruits SH2 domain-containing adaptors, such as SAP and EAT-2, to modulate intracellular signaling. In T cells, SLAMF6 co-stimulates activation and cytokine production; in NK cells, it enhances cytotoxicity. The protein is involved in immune synapse formation and has been implicated in autoimmune and malignant processes. Post-translational modifications include glycosylation, which is essential for ligand binding.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SLAMF6 Knockout HEK293 Cell Line | EDJ-KQ7479 | Human | 114836 | Details Get a Quote |
| SLAMF6 Knockout HeLa Cell Line | EDJ-KQ57939 | Human | 114836 | Details Get a Quote |
| SLAMF6 Knockout A-549 Cell Line | EDJ-KQ66428 | Human | 114836 | Details Get a Quote |
| SLAMF6 Knockout HCT 116 Cell Line | EDJ-KQ74854 | Human | 114836 | Details Get a Quote |
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