SLAMF6 (SLAM Family Member 6) Gene

A key immune receptor modulating T and NK cell function, with implications in autoimmune diseases and cancer.

Gene Information Card

Symbol SLAMF6
Full Name SLAM family member 6
Gene Type protein-coding
Chromosomal Location 1q23.2
NCBI Gene ID 114836 ncbi.nlm.nih.gov/gene/114836
Ensembl ID ENSG00000197142
UniProt ID Q96DU3
OMIM ID 606446
HGNC ID 21392
Aliases CD352, NTB-A, KALI, SF2000

Description

SLAMF6 (SLAM family member 6) is a type I transmembrane protein belonging to the signaling lymphocytic activation molecule (SLAM) family. It is expressed on hematopoietic cells, particularly T cells, NK cells, and B cells. SLAMF6 acts as a self-ligand receptor, mediating homotypic interactions that modulate immune cell signaling. It contains immunoreceptor tyrosine-based switch motifs (ITSMs) in its cytoplasmic tail, which recruit SH2 domain-containing proteins such as SAP (SH2D1A) and EAT-2 to propagate downstream signals. SLAMF6 plays critical roles in T cell activation, NK cell cytotoxicity, and humoral immunity. Dysregulation of SLAMF6 has been implicated in autoimmune diseases (e.g., systemic lupus erythematosus) and certain cancers, making it a potential therapeutic target.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Systemic Lupus Erythematosus (SLE) SLAMF6 polymorphisms and altered expression affect T cell signaling and cytokine production, contributing to autoimmunity. Genetic association studies (OMIM #606446; PMID: 15616575)
Lymphoma (e.g., NK/T cell lymphoma) Aberrant SLAMF6 expression on malignant NK/T cells may promote tumor survival and immune evasion. Expression studies in COSMIC and literature (PMID: 21300980)
Infectious Diseases (e.g., HIV) SLAMF6 modulates CD8+ T cell exhaustion, impacting viral control. Functional studies (PMID: 25847991)

Expression Profile

Tissue Expression
Tissue nTPM level
Spleen 15.2 Medium
Lymph Node 12.8 Medium
Blood 10.5 Medium
Bone Marrow 8.3 Low
Thymus 7.1 Low
Cell Line Expression
Cell Line nTPM Notes
Jurkat (T cell leukemia) 18.4 High expression; used in SLAMF6 signaling studies
Ramos (Burkitt lymphoma) 12.1 Moderate expression
NK-92 (NK cell line) 20.3 High expression; relevant for NK function
K562 (CML) 2.5 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
rs2295867 (intronic variant) SNP Allele frequency ~0.3 (global) Associated with SLE susceptibility in some populations
Missense variant (e.g., p.Arg78His) Missense Rare (<0.01) Potential impact on ligand binding; functional significance unclear
Copy number gain in lymphoma CNV Variable May increase SLAMF6 expression, contributing to tumor phenotype
Mutation functional classification

Loss of Function (LOF)

Loss-of-function mutations in SLAMF6 are rare and not well-documented. In animal models, SLAMF6 knockout leads to impaired T cell and NK cell responses, but human pathogenic loss-of-function variants have not been extensively reported.

Gain of Function (GOF)

Gain-of-function alterations, such as overexpression due to copy number gains, may enhance immune activation or contribute to tumor immune evasion. Specific activating mutations have not been characterized.

Dominant Negative (DN)

No dominant-negative mutations have been described for SLAMF6 in human disease.

Gene Ontology (GO)

• protein binding • identical protein binding
• signal transduction • cell adhesion
• immune response • positive regulation of T cell activation
• natural killer cell mediated cytotoxicity • plasma membrane

Pathways

SLAM family signaling pathway
T cell receptor signaling pathway
NK cell mediated cytotoxicity
Immune system (Reactome)

Protein Summary

The SLAMF6 protein (also known as CD352 or NTB-A) is a 331-amino acid type I membrane glycoprotein with an extracellular region containing two immunoglobulin-like domains (V and C2 type) and a cytoplasmic tail with two ITSMs. It is expressed on the surface of T cells, NK cells, B cells, and other hematopoietic cells. SLAMF6 undergoes homophilic interactions (self-ligand) and recruits SH2 domain-containing adaptors, such as SAP and EAT-2, to modulate intracellular signaling. In T cells, SLAMF6 co-stimulates activation and cytokine production; in NK cells, it enhances cytotoxicity. The protein is involved in immune synapse formation and has been implicated in autoimmune and malignant processes. Post-translational modifications include glycosylation, which is essential for ligand binding.

Related Products

Product name Cat.No. Species Gene ID
SLAMF6 Knockout HEK293 Cell Line EDJ-KQ7479 Human 114836 Details Get a Quote
SLAMF6 Knockout HeLa Cell Line EDJ-KQ57939 Human 114836 Details Get a Quote
SLAMF6 Knockout A-549 Cell Line EDJ-KQ66428 Human 114836 Details Get a Quote
SLAMF6 Knockout HCT 116 Cell Line EDJ-KQ74854 Human 114836 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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