SFXN1: Sideroflexin 1 – Mitochondrial Serine Transporter and Metabolic Regulator
Comprehensive genomic and functional analysis of SFXN1, a mitochondrial carrier protein involved in serine metabolism, one-carbon unit transfer, and links to cancer and neurological disorders.
Gene Information Card
| Symbol | SFXN1 |
|---|---|
| Full Name | Sideroflexin 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 5q35.3 |
| NCBI Gene ID | 94081 ncbi.nlm.nih.gov/gene/94081 |
| Ensembl ID | ENSG00000164430 |
| UniProt ID | Q9H9B4 |
| OMIM ID | 615569 |
| HGNC ID | 16087 |
| Aliases | SLC56A1, DERP7, MGC12972 |
Description
SFXN1 (Sideroflexin 1) encodes a mitochondrial inner membrane protein belonging to the sideroflexin family. It functions as a serine transporter, importing serine into mitochondria for one-carbon unit metabolism. SFXN1 is essential for mitochondrial folate-dependent serine catabolism, contributing to nucleotide synthesis and redox balance. The gene is broadly expressed, with highest levels in liver, kidney, and brain. Dysregulation of SFXN1 is implicated in cancer cell proliferation and neurological conditions.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Cancer (various types) | SFXN1 overexpression supports mitochondrial serine utilization, fueling nucleotide biosynthesis and tumor growth. | COSMIC; PMID: 31073040 |
| Neurodegenerative disorders | Altered SFXN1 expression may disrupt mitochondrial serine metabolism, affecting neuronal survival and function. | OMIM #615569; PMID: 27545680 |
| Mitochondrial diseases | Defects in SFXN1 impair mitochondrial serine transport, potentially leading to mitochondrial dysfunction. | UniProt; PMID: 19282290 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 28.5 | High |
| Kidney | 22.1 | High |
| Brain | 18.3 | High |
| Heart | 12.7 | Medium |
| Lung | 10.4 | Medium |
| Skeletal muscle | 8.9 | Medium |
| Pancreas | 6.2 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 (liver) | 35.2 | High expression |
| HEK293 (embryonic kidney) | 24.8 | High expression |
| SH-SY5Y (neuroblastoma) | 19.5 | Moderate expression |
| A549 (lung carcinoma) | 15.1 | Moderate expression |
| MCF7 (breast cancer) | 12.3 | Moderate expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.344C>T (p.Pro115Leu) | Missense | <0.01% | Unknown; predicted possibly damaging (PolyPhen-2) |
| c.487G>A (p.Gly163Arg) | Missense | <0.01% | Unknown; predicted benign (SIFT) |
| c.832A>G (p.Thr278Ala) | Missense | <0.01% | Unknown; predicted benign |
Mutation functional classification
Loss of Function (LOF)
No confirmed loss-of-function mutations reported in ClinVar or COSMIC.
Gain of Function (GOF)
No confirmed gain-of-function mutations reported.
Dominant Negative (DN)
No confirmed dominant-negative mutations reported.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Mitochondrial one-carbon metabolism (serine catabolism)
• Folate cycle
• Serine biosynthesis and degradation
Protein Summary
SFXN1 is a 322-amino acid mitochondrial inner membrane protein with six transmembrane domains. It mediates the import of serine into the mitochondrial matrix, where serine is converted to glycine and a one-carbon unit (formate) via the mitochondrial folate pathway. This process is critical for de novo purine and thymidine synthesis, as well as for maintaining cellular redox balance. SFXN1 is widely expressed and its upregulation in cancers supports rapid proliferation by enhancing nucleotide production.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SFXN1 Knockout HEK293 Cell Line | EDJ-KQ3949 | Human | 94081 | Details Get a Quote |
| SFXN1 Knockout A-549 Cell Line | EDJ-KQ26208 | Human | 94081 | Details Get a Quote |
| SFXN1 Knockout HCT 116 Cell Line | EDJ-KQ26209 | Human | 94081 | Details Get a Quote |
| SFXN1 Knockout HeLa Cell Line | EDJ-KQ26210 | Human | 94081 | Details Get a Quote |
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