SFXN1: Sideroflexin 1 – Mitochondrial Serine Transporter and Metabolic Regulator

Comprehensive genomic and functional analysis of SFXN1, a mitochondrial carrier protein involved in serine metabolism, one-carbon unit transfer, and links to cancer and neurological disorders.

Gene Information Card

Symbol SFXN1
Full Name Sideroflexin 1
Gene Type Protein coding
Chromosomal Location 5q35.3
NCBI Gene ID 94081 ncbi.nlm.nih.gov/gene/94081
Ensembl ID ENSG00000164430
UniProt ID Q9H9B4
OMIM ID 615569
HGNC ID 16087
Aliases SLC56A1, DERP7, MGC12972

Description

SFXN1 (Sideroflexin 1) encodes a mitochondrial inner membrane protein belonging to the sideroflexin family. It functions as a serine transporter, importing serine into mitochondria for one-carbon unit metabolism. SFXN1 is essential for mitochondrial folate-dependent serine catabolism, contributing to nucleotide synthesis and redox balance. The gene is broadly expressed, with highest levels in liver, kidney, and brain. Dysregulation of SFXN1 is implicated in cancer cell proliferation and neurological conditions.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (various types) SFXN1 overexpression supports mitochondrial serine utilization, fueling nucleotide biosynthesis and tumor growth. COSMIC; PMID: 31073040
Neurodegenerative disorders Altered SFXN1 expression may disrupt mitochondrial serine metabolism, affecting neuronal survival and function. OMIM #615569; PMID: 27545680
Mitochondrial diseases Defects in SFXN1 impair mitochondrial serine transport, potentially leading to mitochondrial dysfunction. UniProt; PMID: 19282290

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 28.5 High
Kidney 22.1 High
Brain 18.3 High
Heart 12.7 Medium
Lung 10.4 Medium
Skeletal muscle 8.9 Medium
Pancreas 6.2 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 (liver) 35.2 High expression
HEK293 (embryonic kidney) 24.8 High expression
SH-SY5Y (neuroblastoma) 19.5 Moderate expression
A549 (lung carcinoma) 15.1 Moderate expression
MCF7 (breast cancer) 12.3 Moderate expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.344C>T (p.Pro115Leu) Missense <0.01% Unknown; predicted possibly damaging (PolyPhen-2)
c.487G>A (p.Gly163Arg) Missense <0.01% Unknown; predicted benign (SIFT)
c.832A>G (p.Thr278Ala) Missense <0.01% Unknown; predicted benign
Mutation functional classification

Loss of Function (LOF)

No confirmed loss-of-function mutations reported in ClinVar or COSMIC.

Gain of Function (GOF)

No confirmed gain-of-function mutations reported.

Dominant Negative (DN)

No confirmed dominant-negative mutations reported.

Pathways

Mitochondrial one-carbon metabolism (serine catabolism)
Folate cycle
Serine biosynthesis and degradation

Protein Summary

SFXN1 is a 322-amino acid mitochondrial inner membrane protein with six transmembrane domains. It mediates the import of serine into the mitochondrial matrix, where serine is converted to glycine and a one-carbon unit (formate) via the mitochondrial folate pathway. This process is critical for de novo purine and thymidine synthesis, as well as for maintaining cellular redox balance. SFXN1 is widely expressed and its upregulation in cancers supports rapid proliferation by enhancing nucleotide production.

Related Products

Product name Cat.No. Species Gene ID
SFXN1 Knockout HEK293 Cell Line EDJ-KQ3949 Human 94081 Details Get a Quote
SFXN1 Knockout A-549 Cell Line EDJ-KQ26208 Human 94081 Details Get a Quote
SFXN1 Knockout HCT 116 Cell Line EDJ-KQ26209 Human 94081 Details Get a Quote
SFXN1 Knockout HeLa Cell Line EDJ-KQ26210 Human 94081 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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