SERPINF1
Serpin Family F Member 1 (PEDF)
Gene Information Card
| Symbol | SERPINF1 |
|---|---|
| Full Name | Serpin Family F Member 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 17p13.3 |
| NCBI Gene ID | 5176 ncbi.nlm.nih.gov/gene/5176 |
| Ensembl ID | ENSG00000132386 |
| UniProt ID | P36955 |
| OMIM ID | 172860 |
| HGNC ID | 8824 |
| Aliases | PEDF, EPC-1, OI6, OI12 |
Description
SERPINF1 encodes pigment epithelium-derived factor (PEDF), a 50 kDa secreted glycoprotein belonging to the serpin (serine protease inhibitor) family. Despite its serpin fold, PEDF lacks protease inhibitory activity and functions primarily as a potent anti-angiogenic, neurotrophic, and neuroprotective factor. It is widely expressed in the eye, liver, adipose tissue, bone, and brain. Loss-of-function mutations in SERPINF1 cause autosomal recessive osteogenesis imperfecta type VI (OI6), characterized by bone fragility, defective mineralization, and absence of PEDF in serum.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Osteogenesis imperfecta type VI (OI6) | Loss-of-function mutations in SERPINF1 abolish PEDF secretion, impairing osteoblast differentiation and bone matrix mineralization. | OMIM #613982; ClinVar; multiple case reports |
| Osteogenesis imperfecta type XII (OI12) | Biallelic SERPINF1 mutations lead to a severe, progressively deforming form of OI with rhizomelia. | OMIM #613982; PubMed 21310276 |
| Retinopathy (protective role) | PEDF inhibits retinal neovascularization; reduced levels are associated with diabetic retinopathy and age-related macular degeneration. | UniProt; PubMed 10688881 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 48.2 | High |
| Adipose tissue | 35.7 | High |
| Retina | 30.1 | High |
| Bone | 22.5 | Medium |
| Brain | 18.9 | Medium |
| Heart | 12.3 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 62.4 | Hepatocellular carcinoma cell line |
| ARPE-19 | 55.8 | Retinal pigment epithelial cells |
| hFOB 1.19 | 28.6 | Osteoblast cell line |
| SH-SY5Y | 19.2 | Neuroblastoma cell line |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.829C>T (p.Arg277*) | Nonsense | Rare | Premature stop; loss of PEDF secretion |
| c.650G>A (p.Gly217Glu) | Missense | Rare | Disrupts serpin fold; reduced secretion |
| c.1A>G (p.Met1?) | Start loss | Rare | No translation initiation |
| c.135_136del (p.Leu46Alafs*21) | Frameshift | Rare | Frameshift; truncated protein |
Mutation functional classification
Loss of Function (LOF)
All reported pathogenic SERPINF1 mutations are loss-of-function, leading to absent or non-functional PEDF protein.
Gain of Function (GOF)
No gain-of-function mutations have been described for SERPINF1.
Dominant Negative (DN)
No dominant-negative effects reported; inheritance is autosomal recessive.
View complete mutation data:
Gene Ontology (GO)
Pathways
• REACT:R-HSA-194138 – Signaling by VEGF
• REACT:R-HSA-9006934 – Regulation of angiogenesis by PEDF
• REACT:R-HSA-1474244 – Extracellular matrix organization
Protein Summary
PEDF is a 418-amino-acid secreted glycoprotein with a serpin fold but no protease inhibitory activity. It is a major anti-angiogenic factor in the eye and a neurotrophic factor in the retina and brain. PEDF binds to cell surface receptors (e.g., PNPLA2, LRP6) to exert its effects. In bone, PEDF promotes osteoblast differentiation and mineralization. Loss of PEDF leads to osteogenesis imperfecta type VI, characterized by undermineralized bone, fish-scale lamellae, and elevated alkaline phosphatase.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SERPINF1 Knockout HEK293 Cell Line | EDJ-KQ332 | Human | 5176 | Details Get a Quote |
| SERPINF1 Knockout A-549 Cell Line | EDJ-KQ18500 | Human | 5176 | Details Get a Quote |
| SERPINF1 Knockout HCT 116 Cell Line | EDJ-KQ18501 | Human | 5176 | Details Get a Quote |
| SERPINF1 Knockout HeLa Cell Line | EDJ-KQ18502 | Human | 5176 | Details Get a Quote |
Displaying Records 1 To 4 Of 4 Records