SERPINF1

Serpin Family F Member 1 (PEDF)

Gene Information Card

Symbol SERPINF1
Full Name Serpin Family F Member 1
Gene Type Protein coding
Chromosomal Location 17p13.3
NCBI Gene ID 5176 ncbi.nlm.nih.gov/gene/5176
Ensembl ID ENSG00000132386
UniProt ID P36955
OMIM ID 172860
HGNC ID 8824
Aliases PEDF, EPC-1, OI6, OI12

Description

SERPINF1 encodes pigment epithelium-derived factor (PEDF), a 50 kDa secreted glycoprotein belonging to the serpin (serine protease inhibitor) family. Despite its serpin fold, PEDF lacks protease inhibitory activity and functions primarily as a potent anti-angiogenic, neurotrophic, and neuroprotective factor. It is widely expressed in the eye, liver, adipose tissue, bone, and brain. Loss-of-function mutations in SERPINF1 cause autosomal recessive osteogenesis imperfecta type VI (OI6), characterized by bone fragility, defective mineralization, and absence of PEDF in serum.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Osteogenesis imperfecta type VI (OI6) Loss-of-function mutations in SERPINF1 abolish PEDF secretion, impairing osteoblast differentiation and bone matrix mineralization. OMIM #613982; ClinVar; multiple case reports
Osteogenesis imperfecta type XII (OI12) Biallelic SERPINF1 mutations lead to a severe, progressively deforming form of OI with rhizomelia. OMIM #613982; PubMed 21310276
Retinopathy (protective role) PEDF inhibits retinal neovascularization; reduced levels are associated with diabetic retinopathy and age-related macular degeneration. UniProt; PubMed 10688881

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 48.2 High
Adipose tissue 35.7 High
Retina 30.1 High
Bone 22.5 Medium
Brain 18.9 Medium
Heart 12.3 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 62.4 Hepatocellular carcinoma cell line
ARPE-19 55.8 Retinal pigment epithelial cells
hFOB 1.19 28.6 Osteoblast cell line
SH-SY5Y 19.2 Neuroblastoma cell line
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.829C>T (p.Arg277*) Nonsense Rare Premature stop; loss of PEDF secretion
c.650G>A (p.Gly217Glu) Missense Rare Disrupts serpin fold; reduced secretion
c.1A>G (p.Met1?) Start loss Rare No translation initiation
c.135_136del (p.Leu46Alafs*21) Frameshift Rare Frameshift; truncated protein
Mutation functional classification

Loss of Function (LOF)

All reported pathogenic SERPINF1 mutations are loss-of-function, leading to absent or non-functional PEDF protein.

Gain of Function (GOF)

No gain-of-function mutations have been described for SERPINF1.

Dominant Negative (DN)

No dominant-negative effects reported; inheritance is autosomal recessive.

Pathways

REACT:R-HSA-194138 – Signaling by VEGF
REACT:R-HSA-9006934 – Regulation of angiogenesis by PEDF
REACT:R-HSA-1474244 – Extracellular matrix organization

Protein Summary

PEDF is a 418-amino-acid secreted glycoprotein with a serpin fold but no protease inhibitory activity. It is a major anti-angiogenic factor in the eye and a neurotrophic factor in the retina and brain. PEDF binds to cell surface receptors (e.g., PNPLA2, LRP6) to exert its effects. In bone, PEDF promotes osteoblast differentiation and mineralization. Loss of PEDF leads to osteogenesis imperfecta type VI, characterized by undermineralized bone, fish-scale lamellae, and elevated alkaline phosphatase.

Related Products

Product name Cat.No. Species Gene ID
SERPINF1 Knockout HEK293 Cell Line EDJ-KQ332 Human 5176 Details Get a Quote
SERPINF1 Knockout A-549 Cell Line EDJ-KQ18500 Human 5176 Details Get a Quote
SERPINF1 Knockout HCT 116 Cell Line EDJ-KQ18501 Human 5176 Details Get a Quote
SERPINF1 Knockout HeLa Cell Line EDJ-KQ18502 Human 5176 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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