SCD5

Stearoyl-CoA Desaturase 5

Gene Information Card

Symbol SCD5
Full Name Stearoyl-CoA Desaturase 5
Gene Type protein-coding
Chromosomal Location 4q21.22
NCBI Gene ID 79966 ncbi.nlm.nih.gov/gene/79966
Ensembl ID ENSG00000145284
UniProt ID Q86SK9
OMIM ID 608370
HGNC ID 28966
Aliases SCD2, SCD4, hSCD5, FADS5

Description

SCD5 encodes stearoyl-CoA desaturase 5, an enzyme that catalyzes the introduction of a cis-double bond at the delta-9 position of saturated fatty acyl-CoA substrates, primarily converting stearoyl-CoA (18:0) to oleoyl-CoA (18:1) and palmitoyl-CoA (16:0) to palmitoleoyl-CoA (16:1). This desaturation is a key step in fatty acid metabolism, influencing membrane fluidity, lipid signaling, and energy homeostasis. SCD5 is predominantly expressed in the brain and pancreas, with lower levels in other tissues. Its expression is regulated by dietary factors and hormonal signals, and dysregulation has been implicated in metabolic disorders and cancer progression.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Obesity and Metabolic Syndrome Altered SCD5 expression may disrupt lipid homeostasis, contributing to adiposity and insulin resistance. NCBI Gene, OMIM
Pancreatic Cancer SCD5 overexpression in pancreatic tumors promotes lipid desaturation, supporting cancer cell proliferation and survival. COSMIC, PubMed
Breast Cancer Reduced SCD5 expression correlates with poor prognosis; loss of desaturase activity may alter membrane composition and signaling. ClinVar, PubMed
Neurological Disorders SCD5 is highly expressed in brain; dysregulation may affect neuronal membrane fluidity and myelin synthesis. OMIM, NCBI Gene

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 12.5 High
Pancreas 8.3 Medium
Adipose Tissue 4.1 Low
Liver 2.0 Low
Heart 1.5 Not detected
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 15.2 High expression; used in neuronal studies
MIA PaCa-2 (pancreatic cancer) 9.8 Elevated; relevant to pancreatic cancer models
MCF-7 (breast cancer) 3.5 Moderate; variable in breast cancer lines
HepG2 (hepatocellular carcinoma) 1.2 Low; consistent with liver expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.101C>T (p.Thr34Met) Missense <0.01% Unknown; rare variant in population databases
c.487G>A (p.Gly163Arg) Missense <0.01% Predicted damaging; may reduce enzyme activity
c.1120_1121insA Frameshift <0.01% Loss of function; truncated protein
Mutation functional classification

Loss of Function (LOF)

Frameshift and nonsense mutations (e.g., c.1120_1121insA) are predicted to cause loss of desaturase activity, reducing oleoyl-CoA production.

Gain of Function (GOF)

No confirmed gain-of-function mutations reported in SCD5.

Dominant Negative (DN)

No evidence of dominant-negative effects for SCD5 mutations.

Pathways

Fatty acid biosynthesis (Reactome: R-HSA-8978868)
Stearoyl-CoA desaturase pathway (KEGG: hsa01040)
PPAR signaling pathway (KEGG: hsa03320)

Protein Summary

SCD5 is a 359-amino acid integral membrane protein localized to the endoplasmic reticulum. It contains a conserved fatty acid desaturase domain and four transmembrane helices. The enzyme uses molecular oxygen and NADH to introduce a cis-double bond at the delta-9 position of saturated fatty acids. SCD5 shares high sequence similarity with SCD1 but exhibits distinct tissue-specific expression, particularly in brain and pancreas. Its activity is critical for maintaining the balance of saturated and monounsaturated fatty acids in cellular membranes and lipid droplets.

Related Products

Product name Cat.No. Species Gene ID
SCD5 Knockout HEK293 Cell Line EDJ-KQ1873 Human 79966 Details Get a Quote
SCD5 Knockout A-549 Cell Line EDJ-KQ20446 Human 79966 Details Get a Quote
SCD5 Knockout HCT 116 Cell Line EDJ-KQ21750 Human 79966 Details Get a Quote
SCD5 Knockout HeLa Cell Line EDJ-KQ21751 Human 79966 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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