SCD5
Stearoyl-CoA Desaturase 5
Gene Information Card
| Symbol | SCD5 |
|---|---|
| Full Name | Stearoyl-CoA Desaturase 5 |
| Gene Type | protein-coding |
| Chromosomal Location | 4q21.22 |
| NCBI Gene ID | 79966 ncbi.nlm.nih.gov/gene/79966 |
| Ensembl ID | ENSG00000145284 |
| UniProt ID | Q86SK9 |
| OMIM ID | 608370 |
| HGNC ID | 28966 |
| Aliases | SCD2, SCD4, hSCD5, FADS5 |
Description
SCD5 encodes stearoyl-CoA desaturase 5, an enzyme that catalyzes the introduction of a cis-double bond at the delta-9 position of saturated fatty acyl-CoA substrates, primarily converting stearoyl-CoA (18:0) to oleoyl-CoA (18:1) and palmitoyl-CoA (16:0) to palmitoleoyl-CoA (16:1). This desaturation is a key step in fatty acid metabolism, influencing membrane fluidity, lipid signaling, and energy homeostasis. SCD5 is predominantly expressed in the brain and pancreas, with lower levels in other tissues. Its expression is regulated by dietary factors and hormonal signals, and dysregulation has been implicated in metabolic disorders and cancer progression.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Obesity and Metabolic Syndrome | Altered SCD5 expression may disrupt lipid homeostasis, contributing to adiposity and insulin resistance. | NCBI Gene, OMIM |
| Pancreatic Cancer | SCD5 overexpression in pancreatic tumors promotes lipid desaturation, supporting cancer cell proliferation and survival. | COSMIC, PubMed |
| Breast Cancer | Reduced SCD5 expression correlates with poor prognosis; loss of desaturase activity may alter membrane composition and signaling. | ClinVar, PubMed |
| Neurological Disorders | SCD5 is highly expressed in brain; dysregulation may affect neuronal membrane fluidity and myelin synthesis. | OMIM, NCBI Gene |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 12.5 | High |
| Pancreas | 8.3 | Medium |
| Adipose Tissue | 4.1 | Low |
| Liver | 2.0 | Low |
| Heart | 1.5 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 15.2 | High expression; used in neuronal studies |
| MIA PaCa-2 (pancreatic cancer) | 9.8 | Elevated; relevant to pancreatic cancer models |
| MCF-7 (breast cancer) | 3.5 | Moderate; variable in breast cancer lines |
| HepG2 (hepatocellular carcinoma) | 1.2 | Low; consistent with liver expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.101C>T (p.Thr34Met) | Missense | <0.01% | Unknown; rare variant in population databases |
| c.487G>A (p.Gly163Arg) | Missense | <0.01% | Predicted damaging; may reduce enzyme activity |
| c.1120_1121insA | Frameshift | <0.01% | Loss of function; truncated protein |
Mutation functional classification
Loss of Function (LOF)
Frameshift and nonsense mutations (e.g., c.1120_1121insA) are predicted to cause loss of desaturase activity, reducing oleoyl-CoA production.
Gain of Function (GOF)
No confirmed gain-of-function mutations reported in SCD5.
Dominant Negative (DN)
No evidence of dominant-negative effects for SCD5 mutations.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Fatty acid biosynthesis (Reactome: R-HSA-8978868)
• Stearoyl-CoA desaturase pathway (KEGG: hsa01040)
• PPAR signaling pathway (KEGG: hsa03320)
Protein Summary
SCD5 is a 359-amino acid integral membrane protein localized to the endoplasmic reticulum. It contains a conserved fatty acid desaturase domain and four transmembrane helices. The enzyme uses molecular oxygen and NADH to introduce a cis-double bond at the delta-9 position of saturated fatty acids. SCD5 shares high sequence similarity with SCD1 but exhibits distinct tissue-specific expression, particularly in brain and pancreas. Its activity is critical for maintaining the balance of saturated and monounsaturated fatty acids in cellular membranes and lipid droplets.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| SCD5 Knockout HEK293 Cell Line | EDJ-KQ1873 | Human | 79966 | Details Get a Quote |
| SCD5 Knockout A-549 Cell Line | EDJ-KQ20446 | Human | 79966 | Details Get a Quote |
| SCD5 Knockout HCT 116 Cell Line | EDJ-KQ21750 | Human | 79966 | Details Get a Quote |
| SCD5 Knockout HeLa Cell Line | EDJ-KQ21751 | Human | 79966 | Details Get a Quote |
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