RRP1: Ribosomal RNA Processing 1
A key nucleolar protein involved in pre-rRNA processing and ribosome biogenesis.
Gene Information Card
| Symbol | RRP1 |
|---|---|
| Full Name | Ribosomal RNA Processing 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 21q22.3 |
| NCBI Gene ID | 8568 ncbi.nlm.nih.gov/gene/8568 |
| Ensembl ID | ENSG00000160213 |
| UniProt ID | P56182 |
| OMIM ID | 610655 |
| HGNC ID | 16829 |
| Aliases | Nop52, RRP1A, BXDC2 |
Description
RRP1 (Ribosomal RNA Processing 1) encodes a nucleolar protein essential for the processing of pre-ribosomal RNA (pre-rRNA) during ribosome biogenesis. The protein localizes to the nucleolus and is involved in the early cleavage steps of the 47S pre-rRNA transcript. RRP1 interacts with other ribosome assembly factors and is required for the maturation of the 60S large ribosomal subunit. Its expression is ubiquitous, with highest levels in tissues with active protein synthesis.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| No specific disease association | Not established | No direct evidence from ClinVar or OMIM |
| Cancer (potential role) | Dysregulation of ribosome biogenesis may contribute to tumorigenesis | COSMIC reports somatic mutations in various cancers |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Testis | 28.5 | High |
| Lymph node | 22.1 | High |
| Bone marrow | 19.8 | High |
| Brain | 12.3 | Medium |
| Liver | 8.7 | Medium |
| Heart | 6.4 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa | 25.0 | Cervical carcinoma cell line |
| K562 | 22.3 | Leukemia cell line |
| HEK293 | 20.1 | Embryonic kidney cell line |
| HepG2 | 15.6 | Hepatocellular carcinoma cell line |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.101C>T (p.Thr34Met) | Missense | 0.01% (gnomAD) | Unknown functional impact |
| c.457G>A (p.Gly153Ser) | Missense | 0.005% (gnomAD) | Unknown functional impact |
| c.784_785insA (p.Thr262Asnfs*5) | Frameshift | Rare | Predicted loss of function |
Mutation functional classification
Loss of Function (LOF)
Frameshift and nonsense mutations are predicted to cause loss of function, potentially impairing ribosome biogenesis.
Gain of Function (GOF)
No evidence for gain-of-function mutations.
Dominant Negative (DN)
No evidence for dominant-negative effects.
View complete mutation data:
Gene Ontology (GO)
| • nucleolus (GO:0005730) | • rRNA processing (GO:0006364) |
| • RNA binding (GO:0003723) | • ribosome biogenesis (GO:0042254) |
Pathways
• Ribosome biogenesis in eukaryotes (Reactome: R-HSA-6791226)
• Major pathway of rRNA processing in the nucleolus (Reactome: R-HSA-6790901)
Protein Summary
RRP1 is a 599-amino acid nucleolar protein with a molecular weight of approximately 67 kDa. It contains a conserved N-terminal domain involved in RNA binding and a C-terminal region that mediates protein-protein interactions. The protein is essential for the early cleavage of the 47S pre-rRNA at sites A0, A1, and A2, leading to the production of the 18S rRNA. RRP1 forms a complex with other nucleolar factors such as RRP12 and NOLC1 to facilitate ribosome assembly.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| RRP1B Knockout HEK293 Cell Line | EDJ-KQ7814 | Human | 23076 | Details Get a Quote |
| RRP1B Knockout A-549 Cell Line | EDJ-KQ33339 | Human | 23076 | Details Get a Quote |
| RRP1B Knockout HCT 116 Cell Line | EDJ-KQ33340 | Human | 23076 | Details Get a Quote |
| RRP1B Knockout HeLa Cell Line | EDJ-KQ33341 | Human | 23076 | Details Get a Quote |