PSPH Gene (Phosphoserine Phosphatase): Function, Expression, and Clinical Significance
Comprehensive biomedical overview of the PSPH gene, encoding phosphoserine phosphatase, including genomic data, tissue expression, associated diseases, and mutation landscape.
Gene Information Card
| Symbol | PSPH |
|---|---|
| Full Name | Phosphoserine Phosphatase |
| Gene Type | Protein coding |
| Chromosomal Location | 7p11.2 |
| NCBI Gene ID | 5723 ncbi.nlm.nih.gov/gene/5723 |
| Ensembl ID | ENSG00000106633 |
| UniProt ID | P78330 |
| OMIM ID | 172480 |
| HGNC ID | 9577 |
| Aliases | PSP, PSPase, L-3-phosphoserine phosphatase |
Description
The PSPH gene encodes phosphoserine phosphatase (PSP), a key enzyme in the L-serine biosynthesis pathway. This enzyme catalyzes the final step of serine biosynthesis, converting L-phosphoserine to L-serine and inorganic phosphate. PSP is a homodimeric enzyme that requires magnesium ions for its activity. The protein is primarily localized in the cytoplasm. Mutations in PSPH are associated with phosphoserine phosphatase deficiency, a rare autosomal recessive metabolic disorder characterized by congenital microcephaly, psychomotor retardation, and seizures. PSPH expression is particularly high in the brain, especially in the cerebellum, and is also detected in other tissues. Recent studies have also implicated PSPH in cancer biology, where its overexpression may contribute to tumor growth and progression.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Disease | Mechanism | Evidence |
| Phosphoserine Phosphatase Deficiency (PSPHD) | Loss-of-function mutations in the PSPH gene lead to reduced or absent phosphoserine phosphatase activity, impairing L-serine biosynthesis. This is critical during neurodevelopment, leading to severe neurological symptoms. | OMIM #614023; ClinVar; Multiple case reports (e.g., Veerapandiyan et al., 2018; Acuna-Hidalgo et al., 2014) |
| Cancer (various types) | PSPH overexpression has been observed in several cancers, including breast, colon, and pancreatic cancers. It may promote tumor cell proliferation and survival by supporting serine metabolism, which is crucial for nucleotide synthesis and methylation reactions. | COSMIC; PubMed (e.g., Liu et al., 2020; Zhang et al., 2021) |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Tissue | nTPM | Level |
| Cerebellum | 56.7 | High |
| Cerebral Cortex | 38.2 | Medium |
| Testis | 25.1 | Medium |
| Kidney | 18.4 | Medium |
| Liver | 12.3 | Low |
| Heart | 8.9 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Cell Line | nTPM | Notes |
| SH-SY5Y (Neuroblastoma) | 45.3 | High expression, consistent with neuronal origin. |
| HepG2 (Hepatocellular carcinoma) | 15.2 | Moderate expression. |
| A549 (Lung carcinoma) | 22.8 | Moderate expression. |
| MCF7 (Breast adenocarcinoma) | 35.6 | High expression, potentially linked to cancer metabolism. |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| Variant | Type | Frequency | Effect |
| c.286G>A (p.Gly96Arg) | Missense | Rare (found in PSPHD patients) | Impairs enzyme activity, leading to phosphoserine phosphatase deficiency. |
| c.559C>T (p.Arg187Trp) | Missense | Rare (found in PSPHD patients) | Disrupts protein folding and catalytic function. |
| c.614C>T (p.Pro205Leu) | Missense | Rare (found in PSPHD patients) | Reduces enzyme stability and activity. |
| c.1A>G (p.Met1?) | Start codon loss | Rare | Prevents translation initiation, leading to complete loss of protein. |
Mutation functional classification
Loss of Function (LOF)
The majority of disease-causing PSPH mutations are loss-of-function, resulting in reduced or absent phosphoserine phosphatase activity. This leads to impaired L-serine biosynthesis, particularly affecting the developing brain. These mutations are typically inherited in an autosomal recessive pattern.
Gain of Function (GOF)
No clear gain-of-function mutations have been reported for PSPH in inherited diseases. However, in cancer, somatic copy number gains or transcriptional upregulation leading to increased PSPH expression can be considered a functional gain, promoting tumor metabolism.
Dominant Negative (DN)
There is no evidence for dominant-negative effects of PSPH mutations. The enzyme functions as a homodimer, and while some mutant proteins might interfere with the wild-type protein, the disease inheritance pattern is strictly recessive, suggesting that a single wild-type allele is sufficient for normal function.
View complete mutation data:
Gene Ontology (GO)
| • phosphoserine phosphatase activity | • magnesium ion binding |
| • L-serine biosynthetic process | • phosphatase activity |
| • cellular amino acid metabolic process | • serine family amino acid metabolic process |
| • cytoplasm |
Pathways
• L-serine biosynthesis
• Glycine
• serine and threonine metabolism
• Metabolic pathways
• Amino acid metabolism
Protein Summary
Phosphoserine phosphatase (PSP) is a homodimeric enzyme that catalyzes the hydrolysis of L-phosphoserine to L-serine, the final and rate-limiting step in the L-serine biosynthesis pathway. The protein consists of two identical subunits, each with a catalytic domain. It requires magnesium ions (Mg2+) as a cofactor for its activity. PSP is highly expressed in the brain, particularly in the cerebellum, where L-serine is essential for neuronal development and function. L-serine serves as a precursor for the synthesis of other amino acids, phospholipids, and neurotransmitters. Defects in PSP lead to phosphoserine phosphatase deficiency, a severe neurological disorder. The protein is localized in the cytoplasm.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| PSPH Knockout HEK293 Cell Line | EDJ-KQ5580 | Human | 5723 | Details Get a Quote |
| PSPH Knockout HCT 116 Cell Line | EDJ-KQ27600 | Human | 5723 | Details Get a Quote |
| PSPH Knockout A-549 Cell Line | EDJ-KQ28849 | Human | 5723 | Details Get a Quote |
| PSPH Knockout HeLa Cell Line | EDJ-KQ28851 | Human | 5723 | Details Get a Quote |
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