PSPH Gene (Phosphoserine Phosphatase): Function, Expression, and Clinical Significance

Comprehensive biomedical overview of the PSPH gene, encoding phosphoserine phosphatase, including genomic data, tissue expression, associated diseases, and mutation landscape.

Gene Information Card

Symbol PSPH
Full Name Phosphoserine Phosphatase
Gene Type Protein coding
Chromosomal Location 7p11.2
NCBI Gene ID 5723 ncbi.nlm.nih.gov/gene/5723
Ensembl ID ENSG00000106633
UniProt ID P78330
OMIM ID 172480
HGNC ID 9577
Aliases PSP, PSPase, L-3-phosphoserine phosphatase

Description

The PSPH gene encodes phosphoserine phosphatase (PSP), a key enzyme in the L-serine biosynthesis pathway. This enzyme catalyzes the final step of serine biosynthesis, converting L-phosphoserine to L-serine and inorganic phosphate. PSP is a homodimeric enzyme that requires magnesium ions for its activity. The protein is primarily localized in the cytoplasm. Mutations in PSPH are associated with phosphoserine phosphatase deficiency, a rare autosomal recessive metabolic disorder characterized by congenital microcephaly, psychomotor retardation, and seizures. PSPH expression is particularly high in the brain, especially in the cerebellum, and is also detected in other tissues. Recent studies have also implicated PSPH in cancer biology, where its overexpression may contribute to tumor growth and progression.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Disease Mechanism Evidence
Phosphoserine Phosphatase Deficiency (PSPHD) Loss-of-function mutations in the PSPH gene lead to reduced or absent phosphoserine phosphatase activity, impairing L-serine biosynthesis. This is critical during neurodevelopment, leading to severe neurological symptoms. OMIM #614023; ClinVar; Multiple case reports (e.g., Veerapandiyan et al., 2018; Acuna-Hidalgo et al., 2014)
Cancer (various types) PSPH overexpression has been observed in several cancers, including breast, colon, and pancreatic cancers. It may promote tumor cell proliferation and survival by supporting serine metabolism, which is crucial for nucleotide synthesis and methylation reactions. COSMIC; PubMed (e.g., Liu et al., 2020; Zhang et al., 2021)

Expression Profile

Tissue Expression
Tissue nTPM level
Tissue nTPM Level
Cerebellum 56.7 High
Cerebral Cortex 38.2 Medium
Testis 25.1 Medium
Kidney 18.4 Medium
Liver 12.3 Low
Heart 8.9 Low
Cell Line Expression
Cell Line nTPM Notes
Cell Line nTPM Notes
SH-SY5Y (Neuroblastoma) 45.3 High expression, consistent with neuronal origin.
HepG2 (Hepatocellular carcinoma) 15.2 Moderate expression.
A549 (Lung carcinoma) 22.8 Moderate expression.
MCF7 (Breast adenocarcinoma) 35.6 High expression, potentially linked to cancer metabolism.
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
Variant Type Frequency Effect
c.286G>A (p.Gly96Arg) Missense Rare (found in PSPHD patients) Impairs enzyme activity, leading to phosphoserine phosphatase deficiency.
c.559C>T (p.Arg187Trp) Missense Rare (found in PSPHD patients) Disrupts protein folding and catalytic function.
c.614C>T (p.Pro205Leu) Missense Rare (found in PSPHD patients) Reduces enzyme stability and activity.
c.1A>G (p.Met1?) Start codon loss Rare Prevents translation initiation, leading to complete loss of protein.
Mutation functional classification

Loss of Function (LOF)

The majority of disease-causing PSPH mutations are loss-of-function, resulting in reduced or absent phosphoserine phosphatase activity. This leads to impaired L-serine biosynthesis, particularly affecting the developing brain. These mutations are typically inherited in an autosomal recessive pattern.

Gain of Function (GOF)

No clear gain-of-function mutations have been reported for PSPH in inherited diseases. However, in cancer, somatic copy number gains or transcriptional upregulation leading to increased PSPH expression can be considered a functional gain, promoting tumor metabolism.

Dominant Negative (DN)

There is no evidence for dominant-negative effects of PSPH mutations. The enzyme functions as a homodimer, and while some mutant proteins might interfere with the wild-type protein, the disease inheritance pattern is strictly recessive, suggesting that a single wild-type allele is sufficient for normal function.

Gene Ontology (GO)

• phosphoserine phosphatase activity • magnesium ion binding
• L-serine biosynthetic process • phosphatase activity
• cellular amino acid metabolic process • serine family amino acid metabolic process
• cytoplasm

Pathways

L-serine biosynthesis
Glycine
serine and threonine metabolism
Metabolic pathways
Amino acid metabolism

Protein Summary

Phosphoserine phosphatase (PSP) is a homodimeric enzyme that catalyzes the hydrolysis of L-phosphoserine to L-serine, the final and rate-limiting step in the L-serine biosynthesis pathway. The protein consists of two identical subunits, each with a catalytic domain. It requires magnesium ions (Mg2+) as a cofactor for its activity. PSP is highly expressed in the brain, particularly in the cerebellum, where L-serine is essential for neuronal development and function. L-serine serves as a precursor for the synthesis of other amino acids, phospholipids, and neurotransmitters. Defects in PSP lead to phosphoserine phosphatase deficiency, a severe neurological disorder. The protein is localized in the cytoplasm.

Related Products

Product name Cat.No. Species Gene ID
PSPH Knockout HEK293 Cell Line EDJ-KQ5580 Human 5723 Details Get a Quote
PSPH Knockout HCT 116 Cell Line EDJ-KQ27600 Human 5723 Details Get a Quote
PSPH Knockout A-549 Cell Line EDJ-KQ28849 Human 5723 Details Get a Quote
PSPH Knockout HeLa Cell Line EDJ-KQ28851 Human 5723 Details Get a Quote
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