POLH: DNA Polymerase Eta – Xeroderma Pigmentosum Variant Type
Translesion synthesis polymerase involved in UV damage bypass and somatic hypermutation
Gene Information Card
| Symbol | POLH |
|---|---|
| Full Name | DNA polymerase eta |
| Gene Type | Protein coding |
| Chromosomal Location | 6p21.1 |
| NCBI Gene ID | 5429 ncbi.nlm.nih.gov/gene/5429 |
| Ensembl ID | ENSG00000170734 |
| UniProt ID | Q9Y253 |
| OMIM ID | 603968 |
| HGNC ID | 9181 |
| Aliases | XP-V, RAD30A, XPV |
Description
POLH encodes DNA polymerase eta (Pol η), a Y-family DNA polymerase specialized in translesion synthesis (TLS). Pol η accurately bypasses UV-induced cyclobutane pyrimidine dimers (CPDs) by inserting two adenines opposite the dimer, preventing replication fork stalling and genomic instability. It also participates in somatic hypermutation of immunoglobulin genes. Loss-of-function mutations in POLH cause xeroderma pigmentosum variant (XP-V), characterized by extreme UV sensitivity, high freckling, and a >1000-fold increased risk of skin cancer.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Xeroderma Pigmentosum Variant (XP-V) | Loss-of-function mutations in POLH abolish TLS past UV photoproducts, leading to replication stress and mutagenesis upon UV exposure. | OMIM #278750; ClinVar |
| Cutaneous Malignant Melanoma | Defective Pol η increases UV-induced mutation burden, promoting melanoma development in XP-V patients. | NCBI Gene; COSMIC |
| Basal Cell Carcinoma | Accumulation of unrepaired UV damage in POLH-deficient skin drives BCC formation. | OMIM; ClinVar |
| Squamous Cell Carcinoma | Same mechanism as BCC; XP-V patients show high incidence of SCC. | NCBI Gene; COSMIC |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Skin | 3.5 nTPM | Low |
| Testis | 8.2 nTPM | Medium |
| Lymph node | 4.1 nTPM | Low |
| Bone marrow | 3.0 nTPM | Low |
| Spleen | 2.8 nTPM | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HaCaT (keratinocyte) | 5.1 nTPM | UV-inducible |
| A375 (melanoma) | 4.3 nTPM | Basal expression |
| HEK293 | 3.9 nTPM | Moderate |
| HeLa | 4.0 nTPM | Moderate |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.764G>A (p.Arg255Gln) | Missense | Rare | Loss of polymerase activity; XP-V |
| c.907C>T (p.Arg303Trp) | Missense | Rare | Impaired CPD bypass; XP-V |
| c.1066C>T (p.Arg356*) | Nonsense | Rare | Truncated protein; XP-V |
| c.1648C>T (p.Arg550*) | Nonsense | Rare | Complete loss of function; XP-V |
Mutation functional classification
Loss of Function (LOF)
Most POLH mutations in XP-V are loss-of-function (nonsense, frameshift, missense affecting catalytic activity), abolishing TLS past UV photoproducts.
Gain of Function (GOF)
Not reported; gain-of-function variants are not associated with POLH.
Dominant Negative (DN)
Not described; POLH mutations are recessive in XP-V.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Translesion synthesis (Reactome R-HSA-5655862)
• DNA damage bypass (KEGG hsa03440)
• Nucleotide excision repair (KEGG hsa03420)
Protein Summary
DNA polymerase eta (Pol η) is a 713-amino acid Y-family polymerase with a unique ability to replicate past UV-induced cyclobutane pyrimidine dimers with high accuracy. It contains an N-terminal polymerase domain and a C-terminal PCNA-interacting motif (PIP box). Pol η is recruited to stalled replication forks via monoubiquitinated PCNA, enabling TLS. Defects in Pol η cause xeroderma pigmentosum variant (XP-V), a disorder marked by UV hypersensitivity and predisposition to skin cancers. Pol η also contributes to somatic hypermutation in B cells by introducing mutations at A/T bases.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| POLH Knockout HEK293 Cell Line | EDJ-KQ3612 | Human | 5429 | Details Get a Quote |
| POLH Knockout A-549 Cell Line | EDJ-KQ25539 | Human | 5429 | Details Get a Quote |
| POLH Knockout HCT 116 Cell Line | EDJ-KQ25540 | Human | 5429 | Details Get a Quote |
| POLH Knockout HeLa Cell Line | EDJ-KQ25541 | Human | 5429 | Details Get a Quote |
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