POLH: DNA Polymerase Eta – Xeroderma Pigmentosum Variant Type

Translesion synthesis polymerase involved in UV damage bypass and somatic hypermutation

Gene Information Card

Symbol POLH
Full Name DNA polymerase eta
Gene Type Protein coding
Chromosomal Location 6p21.1
NCBI Gene ID 5429 ncbi.nlm.nih.gov/gene/5429
Ensembl ID ENSG00000170734
UniProt ID Q9Y253
OMIM ID 603968
HGNC ID 9181
Aliases XP-V, RAD30A, XPV

Description

POLH encodes DNA polymerase eta (Pol η), a Y-family DNA polymerase specialized in translesion synthesis (TLS). Pol η accurately bypasses UV-induced cyclobutane pyrimidine dimers (CPDs) by inserting two adenines opposite the dimer, preventing replication fork stalling and genomic instability. It also participates in somatic hypermutation of immunoglobulin genes. Loss-of-function mutations in POLH cause xeroderma pigmentosum variant (XP-V), characterized by extreme UV sensitivity, high freckling, and a >1000-fold increased risk of skin cancer.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Xeroderma Pigmentosum Variant (XP-V) Loss-of-function mutations in POLH abolish TLS past UV photoproducts, leading to replication stress and mutagenesis upon UV exposure. OMIM #278750; ClinVar
Cutaneous Malignant Melanoma Defective Pol η increases UV-induced mutation burden, promoting melanoma development in XP-V patients. NCBI Gene; COSMIC
Basal Cell Carcinoma Accumulation of unrepaired UV damage in POLH-deficient skin drives BCC formation. OMIM; ClinVar
Squamous Cell Carcinoma Same mechanism as BCC; XP-V patients show high incidence of SCC. NCBI Gene; COSMIC

Expression Profile

Tissue Expression
Tissue nTPM level
Skin 3.5 nTPM Low
Testis 8.2 nTPM Medium
Lymph node 4.1 nTPM Low
Bone marrow 3.0 nTPM Low
Spleen 2.8 nTPM Low
Cell Line Expression
Cell Line nTPM Notes
HaCaT (keratinocyte) 5.1 nTPM UV-inducible
A375 (melanoma) 4.3 nTPM Basal expression
HEK293 3.9 nTPM Moderate
HeLa 4.0 nTPM Moderate
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.764G>A (p.Arg255Gln) Missense Rare Loss of polymerase activity; XP-V
c.907C>T (p.Arg303Trp) Missense Rare Impaired CPD bypass; XP-V
c.1066C>T (p.Arg356*) Nonsense Rare Truncated protein; XP-V
c.1648C>T (p.Arg550*) Nonsense Rare Complete loss of function; XP-V
Mutation functional classification

Loss of Function (LOF)

Most POLH mutations in XP-V are loss-of-function (nonsense, frameshift, missense affecting catalytic activity), abolishing TLS past UV photoproducts.

Gain of Function (GOF)

Not reported; gain-of-function variants are not associated with POLH.

Dominant Negative (DN)

Not described; POLH mutations are recessive in XP-V.

Pathways

Translesion synthesis (Reactome R-HSA-5655862)
DNA damage bypass (KEGG hsa03440)
Nucleotide excision repair (KEGG hsa03420)

Protein Summary

DNA polymerase eta (Pol η) is a 713-amino acid Y-family polymerase with a unique ability to replicate past UV-induced cyclobutane pyrimidine dimers with high accuracy. It contains an N-terminal polymerase domain and a C-terminal PCNA-interacting motif (PIP box). Pol η is recruited to stalled replication forks via monoubiquitinated PCNA, enabling TLS. Defects in Pol η cause xeroderma pigmentosum variant (XP-V), a disorder marked by UV hypersensitivity and predisposition to skin cancers. Pol η also contributes to somatic hypermutation in B cells by introducing mutations at A/T bases.

Related Products

Product name Cat.No. Species Gene ID
POLH Knockout HEK293 Cell Line EDJ-KQ3612 Human 5429 Details Get a Quote
POLH Knockout A-549 Cell Line EDJ-KQ25539 Human 5429 Details Get a Quote
POLH Knockout HCT 116 Cell Line EDJ-KQ25540 Human 5429 Details Get a Quote
POLH Knockout HeLa Cell Line EDJ-KQ25541 Human 5429 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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