PKD2L1: Polycystin 2 Like 1, Transient Receptor Potential Cation Channel
A comprehensive biomedical resource for PKD2L1 gene, including genomic annotation, expression, mutations, and clinical relevance.
Gene Information Card
| Symbol | PKD2L1 |
|---|---|
| Full Name | polycystin 2 like 1, transient receptor potential cation channel |
| Gene Type | protein coding |
| Chromosomal Location | 10q24.31 |
| NCBI Gene ID | 9033 ncbi.nlm.nih.gov/gene/9033 |
| Ensembl ID | ENSG00000107593 |
| UniProt ID | Q9P0L9 |
| OMIM ID | 604532 |
| HGNC ID | 9010 |
| Aliases | PKD2L, TRPP3, PKDL |
Description
PKD2L1 (polycystin 2 like 1) encodes a member of the polycystin family, a subgroup of the transient receptor potential (TRP) cation channel superfamily. The protein forms a non-selective cation channel that is permeable to calcium and other monovalent cations. It is involved in sensory transduction, including sour taste perception and pH sensing. Mutations in this gene have been associated with autosomal dominant polycystic kidney disease-like phenotypes and other ciliopathies.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Polycystic kidney disease 2-like (mild form) | Altered channel function leading to cyst formation | OMIM #604532 |
| Sour taste perception disorder | Loss of PKD2L1 function impairs acid sensing in taste buds | PubMed studies |
| Ciliopathy-related phenotypes | Defective ciliary calcium signaling due to channel dysfunction | ClinVar submissions |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Testis | 12.3 | Medium |
| Kidney | 8.7 | Medium |
| Brain (cerebellum) | 6.5 | Low |
| Heart | 4.2 | Low |
| Liver | 1.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK293 | 15.2 | High expression in recombinant systems |
| HeLa | 3.4 | Low endogenous expression |
| K562 | 0.8 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1250G>A (p.Arg417His) | Missense | <0.01% | Altered channel gating |
| c.1672C>T (p.Arg558*) | Nonsense | <0.01% | Loss of function, truncated protein |
| c.214delG (p.Ala72Profs*15) | Frameshift | <0.01% | Loss of function |
Mutation functional classification
Loss of Function (LOF)
Nonsense and frameshift mutations (e.g., p.Arg558*, p.Ala72Profs*15) result in truncated or absent protein, leading to loss of channel activity.
Gain of Function (GOF)
No confirmed gain-of-function mutations reported in PKD2L1.
Dominant Negative (DN)
Missense mutations (e.g., p.Arg417His) may exert dominant-negative effects by disrupting channel assembly or function.
View complete mutation data:
Gene Ontology (GO)
| • calcium channel activity (GO:0005262) | • mechanosensitive ion channel activity (GO:0008381) |
| • plasma membrane (GO:0005886) | • T-tubule (GO:0030315) |
| • sperm flagellum (GO:0036126) | • response to stimulus (GO:0050896) |
| • calcium ion transmembrane transport (GO:0070588) |
Pathways
• Polycystin signaling pathway (Reactome: R-HSA-5620912)
• TRP channel regulation (KEGG: hsa04750)
• Ciliary signaling (GO:0060271)
Protein Summary
The PKD2L1 protein (UniProt Q9P0L9) is a 764-amino acid transmembrane protein with six transmembrane domains and a C-terminal coiled-coil domain. It functions as a non-selective cation channel permeable to Ca2+, Na+, and K+. The channel is activated by acidic pH and mechanical stimuli. It localizes to the plasma membrane, cilia, and sperm flagellum. PKD2L1 interacts with PKD1L3 and other polycystins to form functional channel complexes involved in sensory transduction.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| PKD2L1 Knockout HEK293 Cell Line | EDJ-KQ6437 | Human | 9033 | Details Get a Quote |
| PKD2L1 Knockout HeLa Cell Line | EDJ-KQ55060 | Human | 9033 | Details Get a Quote |
| PKD2L1 Knockout A-549 Cell Line | EDJ-KQ63540 | Human | 9033 | Details Get a Quote |
| PKD2L1 Knockout HCT 116 Cell Line | EDJ-KQ72010 | Human | 9033 | Details Get a Quote |
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