PKD2L1: Polycystin 2 Like 1, Transient Receptor Potential Cation Channel

A comprehensive biomedical resource for PKD2L1 gene, including genomic annotation, expression, mutations, and clinical relevance.

Gene Information Card

Symbol PKD2L1
Full Name polycystin 2 like 1, transient receptor potential cation channel
Gene Type protein coding
Chromosomal Location 10q24.31
NCBI Gene ID 9033 ncbi.nlm.nih.gov/gene/9033
Ensembl ID ENSG00000107593
UniProt ID Q9P0L9
OMIM ID 604532
HGNC ID 9010
Aliases PKD2L, TRPP3, PKDL

Description

PKD2L1 (polycystin 2 like 1) encodes a member of the polycystin family, a subgroup of the transient receptor potential (TRP) cation channel superfamily. The protein forms a non-selective cation channel that is permeable to calcium and other monovalent cations. It is involved in sensory transduction, including sour taste perception and pH sensing. Mutations in this gene have been associated with autosomal dominant polycystic kidney disease-like phenotypes and other ciliopathies.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Polycystic kidney disease 2-like (mild form) Altered channel function leading to cyst formation OMIM #604532
Sour taste perception disorder Loss of PKD2L1 function impairs acid sensing in taste buds PubMed studies
Ciliopathy-related phenotypes Defective ciliary calcium signaling due to channel dysfunction ClinVar submissions

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 12.3 Medium
Kidney 8.7 Medium
Brain (cerebellum) 6.5 Low
Heart 4.2 Low
Liver 1.1 Not detected
Cell Line Expression
Cell Line nTPM Notes
HEK293 15.2 High expression in recombinant systems
HeLa 3.4 Low endogenous expression
K562 0.8 Not detected
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1250G>A (p.Arg417His) Missense <0.01% Altered channel gating
c.1672C>T (p.Arg558*) Nonsense <0.01% Loss of function, truncated protein
c.214delG (p.Ala72Profs*15) Frameshift <0.01% Loss of function
Mutation functional classification

Loss of Function (LOF)

Nonsense and frameshift mutations (e.g., p.Arg558*, p.Ala72Profs*15) result in truncated or absent protein, leading to loss of channel activity.

Gain of Function (GOF)

No confirmed gain-of-function mutations reported in PKD2L1.

Dominant Negative (DN)

Missense mutations (e.g., p.Arg417His) may exert dominant-negative effects by disrupting channel assembly or function.

Gene Ontology (GO)

calcium channel activity (GO:0005262) • mechanosensitive ion channel activity (GO:0008381)
plasma membrane (GO:0005886) T-tubule (GO:0030315)
sperm flagellum (GO:0036126) • response to stimulus (GO:0050896)
calcium ion transmembrane transport (GO:0070588)

Pathways

Polycystin signaling pathway (Reactome: R-HSA-5620912)
TRP channel regulation (KEGG: hsa04750)
Ciliary signaling (GO:0060271)

Protein Summary

The PKD2L1 protein (UniProt Q9P0L9) is a 764-amino acid transmembrane protein with six transmembrane domains and a C-terminal coiled-coil domain. It functions as a non-selective cation channel permeable to Ca2+, Na+, and K+. The channel is activated by acidic pH and mechanical stimuli. It localizes to the plasma membrane, cilia, and sperm flagellum. PKD2L1 interacts with PKD1L3 and other polycystins to form functional channel complexes involved in sensory transduction.

Related Products

Product name Cat.No. Species Gene ID
PKD2L1 Knockout HEK293 Cell Line EDJ-KQ6437 Human 9033 Details Get a Quote
PKD2L1 Knockout HeLa Cell Line EDJ-KQ55060 Human 9033 Details Get a Quote
PKD2L1 Knockout A-549 Cell Line EDJ-KQ63540 Human 9033 Details Get a Quote
PKD2L1 Knockout HCT 116 Cell Line EDJ-KQ72010 Human 9033 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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