PDCD1LG2 (Programmed Cell Death 1 Ligand 2)
Immune checkpoint ligand in the B7/CD28 family, key regulator of T-cell activation and tolerance
Gene Information Card
| Symbol | PDCD1LG2 |
|---|---|
| Full Name | Programmed Cell Death 1 Ligand 2 |
| Gene Type | Protein coding |
| Chromosomal Location | 9p24.1 |
| NCBI Gene ID | 80380 ncbi.nlm.nih.gov/gene/80380 |
| Ensembl ID | ENSG00000197646 |
| UniProt ID | Q9BQ51 |
| OMIM ID | 605723 |
| HGNC ID | 18731 |
| Aliases | PD-L2, B7-DC, CD273, Btdc, PDL2 |
Description
PDCD1LG2 encodes programmed cell death 1 ligand 2 (PD-L2), a member of the B7 family of immune regulatory ligands. PD-L2 binds to the PD-1 receptor on activated T cells, delivering a co-inhibitory signal that suppresses T-cell proliferation, cytokine production, and cytotoxicity. It is expressed on antigen-presenting cells (dendritic cells, macrophages) and some non-hematopoietic cells. PD-L2 plays a critical role in peripheral tolerance, autoimmunity, and tumor immune evasion. The gene is located on chromosome 9p24.1, a region frequently altered in Hodgkin lymphoma and other cancers.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Hodgkin lymphoma | 9p24.1 amplification increases PD-L2 expression, enhancing immune evasion via PD-1 binding | PMID: 20628145, 25329318 |
| Non-small cell lung cancer | PD-L2 overexpression on tumor cells correlates with poor prognosis and resistance to anti-PD-1 therapy | PMID: 27794028 |
| Systemic lupus erythematosus | Polymorphisms in PDCD1LG2 associated with increased disease susceptibility | PMID: 19667044 |
| Asthma | PD-L2 expression on airway dendritic cells promotes Th2 responses and airway inflammation | PMID: 16920922 |
| Rheumatoid arthritis | Elevated soluble PD-L2 in synovial fluid correlates with disease activity | PMID: 25604533 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Lymph node | 8.2 | Medium |
| Spleen | 7.5 | Medium |
| Lung | 4.1 | Low |
| Small intestine | 3.8 | Low |
| Bone marrow | 3.5 | Low |
| Liver | 1.2 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| THP-1 (monocytic leukemia) | 12.3 | High expression after IFN-γ stimulation |
| A549 (lung carcinoma) | 2.1 | Low baseline, inducible by IL-4 |
| HUVEC (endothelial) | 1.5 | Very low |
| Jurkat (T-cell) | 0.8 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1A>G (p.Met1?) | Missense | <0.01% | Loss of start codon, likely loss of function |
| c.487C>T (p.Arg163Trp) | Missense | 0.02% | Reduced PD-1 binding affinity |
| c.814G>A (p.Gly272Arg) | Missense | <0.01% | Unknown functional effect |
| 9p24.1 amplification | Copy number gain | Variable (up to 30% in Hodgkin lymphoma) | Increased PD-L2 expression, immune evasion |
Mutation functional classification
Loss of Function (LOF)
c.1A>G (p.Met1?) – abolishes translation initiation; rare in population databases.
Gain of Function (GOF)
9p24.1 amplification – increases PD-L2 protein levels, enhancing PD-1-mediated inhibition.
Dominant Negative (DN)
No dominant-negative mutations reported for PDCD1LG2.
View complete mutation data:
Gene Ontology (GO)
Pathways
• PD-1 signaling (Reactome: R-HSA-389948)
• Immune checkpoint pathway (KEGG: hsa05340)
• Costimulation by the CD28 family (Reactome: R-HSA-388841)
Protein Summary
PD-L2 (UniProt Q9BQ51) is a 273-amino acid type I transmembrane protein with an extracellular Ig-like V-type domain and a short cytoplasmic tail. It is expressed on antigen-presenting cells and induced by cytokines such as IL-4 and IFN-γ. PD-L2 binds PD-1 with higher affinity than PD-L1, delivering inhibitory signals that reduce T-cell activation. The protein is a target for cancer immunotherapy; blocking antibodies are in clinical development. Soluble forms of PD-L2 are detected in serum and may serve as biomarkers.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| PDCD1LG2 Knockout HEK293 Cell Line | EDJ-KQ14714 | Human | 80380 | Details Get a Quote |
| PDCD1LG2 Knockout 786-O Cell Line | EDJ-KZ388 | Human | 80380 | Details Get a Quote |
| PDCD1LG2 Knockout HeLa Cell Line | EDJ-KQ57334 | Human | 80380 | Details Get a Quote |
| PDCD1LG2 Knockout A-549 Cell Line | EDJ-KQ65840 | Human | 80380 | Details Get a Quote |
| PDCD1LG2 Knockout HCT 116 Cell Line | EDJ-KQ74264 | Human | 80380 | Details Get a Quote |
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