PDCD1LG2 (Programmed Cell Death 1 Ligand 2)

Immune checkpoint ligand in the B7/CD28 family, key regulator of T-cell activation and tolerance

Gene Information Card

Symbol PDCD1LG2
Full Name Programmed Cell Death 1 Ligand 2
Gene Type Protein coding
Chromosomal Location 9p24.1
NCBI Gene ID 80380 ncbi.nlm.nih.gov/gene/80380
Ensembl ID ENSG00000197646
UniProt ID Q9BQ51
OMIM ID 605723
HGNC ID 18731
Aliases PD-L2, B7-DC, CD273, Btdc, PDL2

Description

PDCD1LG2 encodes programmed cell death 1 ligand 2 (PD-L2), a member of the B7 family of immune regulatory ligands. PD-L2 binds to the PD-1 receptor on activated T cells, delivering a co-inhibitory signal that suppresses T-cell proliferation, cytokine production, and cytotoxicity. It is expressed on antigen-presenting cells (dendritic cells, macrophages) and some non-hematopoietic cells. PD-L2 plays a critical role in peripheral tolerance, autoimmunity, and tumor immune evasion. The gene is located on chromosome 9p24.1, a region frequently altered in Hodgkin lymphoma and other cancers.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Hodgkin lymphoma 9p24.1 amplification increases PD-L2 expression, enhancing immune evasion via PD-1 binding PMID: 20628145, 25329318
Non-small cell lung cancer PD-L2 overexpression on tumor cells correlates with poor prognosis and resistance to anti-PD-1 therapy PMID: 27794028
Systemic lupus erythematosus Polymorphisms in PDCD1LG2 associated with increased disease susceptibility PMID: 19667044
Asthma PD-L2 expression on airway dendritic cells promotes Th2 responses and airway inflammation PMID: 16920922
Rheumatoid arthritis Elevated soluble PD-L2 in synovial fluid correlates with disease activity PMID: 25604533

Expression Profile

Tissue Expression
Tissue nTPM level
Lymph node 8.2 Medium
Spleen 7.5 Medium
Lung 4.1 Low
Small intestine 3.8 Low
Bone marrow 3.5 Low
Liver 1.2 Not detected
Cell Line Expression
Cell Line nTPM Notes
THP-1 (monocytic leukemia) 12.3 High expression after IFN-γ stimulation
A549 (lung carcinoma) 2.1 Low baseline, inducible by IL-4
HUVEC (endothelial) 1.5 Very low
Jurkat (T-cell) 0.8 Not detected
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1A>G (p.Met1?) Missense <0.01% Loss of start codon, likely loss of function
c.487C>T (p.Arg163Trp) Missense 0.02% Reduced PD-1 binding affinity
c.814G>A (p.Gly272Arg) Missense <0.01% Unknown functional effect
9p24.1 amplification Copy number gain Variable (up to 30% in Hodgkin lymphoma) Increased PD-L2 expression, immune evasion
Mutation functional classification

Loss of Function (LOF)

c.1A>G (p.Met1?) – abolishes translation initiation; rare in population databases.

Gain of Function (GOF)

9p24.1 amplification – increases PD-L2 protein levels, enhancing PD-1-mediated inhibition.

Dominant Negative (DN)

No dominant-negative mutations reported for PDCD1LG2.

Pathways

PD-1 signaling (Reactome: R-HSA-389948)
Immune checkpoint pathway (KEGG: hsa05340)
Costimulation by the CD28 family (Reactome: R-HSA-388841)

Protein Summary

PD-L2 (UniProt Q9BQ51) is a 273-amino acid type I transmembrane protein with an extracellular Ig-like V-type domain and a short cytoplasmic tail. It is expressed on antigen-presenting cells and induced by cytokines such as IL-4 and IFN-γ. PD-L2 binds PD-1 with higher affinity than PD-L1, delivering inhibitory signals that reduce T-cell activation. The protein is a target for cancer immunotherapy; blocking antibodies are in clinical development. Soluble forms of PD-L2 are detected in serum and may serve as biomarkers.

Related Products

Product name Cat.No. Species Gene ID
PDCD1LG2 Knockout HEK293 Cell Line EDJ-KQ14714 Human 80380 Details Get a Quote
PDCD1LG2 Knockout 786-O Cell Line EDJ-KZ388 Human 80380 Details Get a Quote
PDCD1LG2 Knockout HeLa Cell Line EDJ-KQ57334 Human 80380 Details Get a Quote
PDCD1LG2 Knockout A-549 Cell Line EDJ-KQ65840 Human 80380 Details Get a Quote
PDCD1LG2 Knockout HCT 116 Cell Line EDJ-KQ74264 Human 80380 Details Get a Quote
Displaying Records 1 To 5 Of 5 Records
Contact Us
*
*
*
*
How did you hear about us: