PCCB Gene: Propionyl-CoA Carboxylase Subunit Beta
Genetic and Functional Insights into PCCB and Its Role in Propionic Acidemia
Gene Information Card
| Symbol | PCCB |
|---|---|
| Full Name | Propionyl-CoA Carboxylase Subunit Beta |
| Gene Type | Protein coding |
| Chromosomal Location | 3q22.3 |
| NCBI Gene ID | 5096 ncbi.nlm.nih.gov/gene/5096 |
| Ensembl ID | ENSG00000114013 |
| UniProt ID | P05166 |
| OMIM ID | 232050 |
| HGNC ID | 8654 |
| Aliases | PCCase subunit beta, propionyl CoA carboxylase beta chain |
Description
The PCCB gene encodes the beta subunit of propionyl-CoA carboxylase, a biotin-dependent mitochondrial enzyme that catalyzes the carboxylation of propionyl-CoA to D-methylmalonyl-CoA. This reaction is a critical step in the catabolism of branched-chain amino acids, odd-chain fatty acids, and cholesterol side chains. Mutations in PCCB cause propionic acidemia (PA), an autosomal recessive metabolic disorder characterized by accumulation of propionic acid and its derivatives, leading to metabolic acidosis, neurological impairment, and multi-organ dysfunction.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Propionic Acidemia (PA) | Loss-of-function mutations in PCCB impair propionyl-CoA carboxylase activity, leading to toxic accumulation of propionyl-CoA and its metabolites. | ClinVar, OMIM |
| Propionic Acidemia Type II (pccB deficiency) | Biallelic pathogenic variants in PCCB result in deficient beta subunit, causing the same metabolic phenotype as alpha subunit defects. | OMIM, NCBI |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 22.3 | High |
| Kidney | 18.7 | High |
| Heart | 12.1 | Medium |
| Brain | 8.5 | Medium |
| Skeletal Muscle | 6.2 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 25.4 | Hepatocyte model, high expression |
| HEK293 | 15.8 | Embryonic kidney, moderate expression |
| K562 | 9.3 | Myelogenous leukemia, low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1228C>T (p.Arg410Trp) | Missense | Common in propionic acidemia | Loss of enzyme activity |
| c.1304A>G (p.Tyr435Cys) | Missense | Reported in multiple PA patients | Reduced catalytic function |
| c.1087T>C (p.Ser363Pro) | Missense | Rare | Impaired subunit assembly |
| c.838dup (p.Leu280Profs*12) | Frameshift | Null allele | Complete loss of function |
Mutation functional classification
Loss of Function (LOF)
Most PCCB mutations are loss-of-function, reducing or abolishing propionyl-CoA carboxylase activity, leading to propionic acidemia.
Gain of Function (GOF)
No gain-of-function mutations reported for PCCB.
Dominant Negative (DN)
No dominant-negative effects described; disease is recessive.
View complete mutation data:
Gene Ontology (GO)
| • propionyl-CoA carboxylase activity | • biotin binding |
| • mitochondrion | • carboxylation |
| • fatty acid catabolic process | • branched-chain amino acid catabolic process |
Pathways
• Propanoate metabolism
• Valine
• leucine and isoleucine degradation
• Metabolic pathways
Protein Summary
The PCCB protein is the beta subunit of propionyl-CoA carboxylase (PCC), a heterododecameric enzyme composed of six alpha (PCCA) and six beta (PCCB) subunits. The beta subunit catalyzes the carboxyl transfer reaction using biotin as a cofactor. The enzyme is localized in the mitochondrial matrix and is essential for the metabolism of propionyl-CoA derived from catabolism of several amino acids, odd-chain fatty acids, and cholesterol. Deficiency leads to propionic acidemia.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| PCCB Knockout HEK293 Cell Line | EDJ-KQ2596 | Human | 5096 | Details Get a Quote |
| PCCB Knockout A-549 Cell Line | EDJ-KQ23297 | Human | 5096 | Details Get a Quote |
| PCCB Knockout HCT 116 Cell Line | EDJ-KQ23298 | Human | 5096 | Details Get a Quote |
| PCCB Knockout HeLa Cell Line | EDJ-KQ23299 | Human | 5096 | Details Get a Quote |
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