PCCB Gene: Propionyl-CoA Carboxylase Subunit Beta

Genetic and Functional Insights into PCCB and Its Role in Propionic Acidemia

Gene Information Card

Symbol PCCB
Full Name Propionyl-CoA Carboxylase Subunit Beta
Gene Type Protein coding
Chromosomal Location 3q22.3
NCBI Gene ID 5096 ncbi.nlm.nih.gov/gene/5096
Ensembl ID ENSG00000114013
UniProt ID P05166
OMIM ID 232050
HGNC ID 8654
Aliases PCCase subunit beta, propionyl CoA carboxylase beta chain

Description

The PCCB gene encodes the beta subunit of propionyl-CoA carboxylase, a biotin-dependent mitochondrial enzyme that catalyzes the carboxylation of propionyl-CoA to D-methylmalonyl-CoA. This reaction is a critical step in the catabolism of branched-chain amino acids, odd-chain fatty acids, and cholesterol side chains. Mutations in PCCB cause propionic acidemia (PA), an autosomal recessive metabolic disorder characterized by accumulation of propionic acid and its derivatives, leading to metabolic acidosis, neurological impairment, and multi-organ dysfunction.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Propionic Acidemia (PA) Loss-of-function mutations in PCCB impair propionyl-CoA carboxylase activity, leading to toxic accumulation of propionyl-CoA and its metabolites. ClinVar, OMIM
Propionic Acidemia Type II (pccB deficiency) Biallelic pathogenic variants in PCCB result in deficient beta subunit, causing the same metabolic phenotype as alpha subunit defects. OMIM, NCBI

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 22.3 High
Kidney 18.7 High
Heart 12.1 Medium
Brain 8.5 Medium
Skeletal Muscle 6.2 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 25.4 Hepatocyte model, high expression
HEK293 15.8 Embryonic kidney, moderate expression
K562 9.3 Myelogenous leukemia, low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1228C>T (p.Arg410Trp) Missense Common in propionic acidemia Loss of enzyme activity
c.1304A>G (p.Tyr435Cys) Missense Reported in multiple PA patients Reduced catalytic function
c.1087T>C (p.Ser363Pro) Missense Rare Impaired subunit assembly
c.838dup (p.Leu280Profs*12) Frameshift Null allele Complete loss of function
Mutation functional classification

Loss of Function (LOF)

Most PCCB mutations are loss-of-function, reducing or abolishing propionyl-CoA carboxylase activity, leading to propionic acidemia.

Gain of Function (GOF)

No gain-of-function mutations reported for PCCB.

Dominant Negative (DN)

No dominant-negative effects described; disease is recessive.

Gene Ontology (GO)

• propionyl-CoA carboxylase activity • biotin binding
• mitochondrion • carboxylation
• fatty acid catabolic process • branched-chain amino acid catabolic process

Pathways

Propanoate metabolism
Valine
leucine and isoleucine degradation
Metabolic pathways

Protein Summary

The PCCB protein is the beta subunit of propionyl-CoA carboxylase (PCC), a heterododecameric enzyme composed of six alpha (PCCA) and six beta (PCCB) subunits. The beta subunit catalyzes the carboxyl transfer reaction using biotin as a cofactor. The enzyme is localized in the mitochondrial matrix and is essential for the metabolism of propionyl-CoA derived from catabolism of several amino acids, odd-chain fatty acids, and cholesterol. Deficiency leads to propionic acidemia.

Related Products

Product name Cat.No. Species Gene ID
PCCB Knockout HEK293 Cell Line EDJ-KQ2596 Human 5096 Details Get a Quote
PCCB Knockout A-549 Cell Line EDJ-KQ23297 Human 5096 Details Get a Quote
PCCB Knockout HCT 116 Cell Line EDJ-KQ23298 Human 5096 Details Get a Quote
PCCB Knockout HeLa Cell Line EDJ-KQ23299 Human 5096 Details Get a Quote
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