PCCA Gene - Propionyl-CoA Carboxylase Subunit Alpha
PCCA: Genetic Variants, Propionic Acidemia, and Metabolic Pathways
Gene Information Card
| Symbol | PCCA |
|---|---|
| Full Name | Propionyl-CoA Carboxylase Subunit Alpha |
| Gene Type | Protein coding |
| Chromosomal Location | 13q32.3 |
| NCBI Gene ID | 5095 ncbi.nlm.nih.gov/gene/5095 |
| Ensembl ID | ENSG00000102316 |
| UniProt ID | P05165 |
| OMIM ID | 232000 |
| HGNC ID | 8653 |
| Aliases | PCCase alpha, PCC, PA, propionyl CoA carboxylase alpha |
Description
The PCCA gene encodes the alpha subunit of propionyl-CoA carboxylase (PCC), a biotin-dependent mitochondrial enzyme that catalyzes the carboxylation of propionyl-CoA to D-methylmalonyl-CoA. This reaction is a critical step in the catabolism of branched-chain amino acids, odd-chain fatty acids, and cholesterol side chains. Mutations in PCCA cause propionic acidemia (PA), an autosomal recessive metabolic disorder characterized by accumulation of propionic acid and its derivatives, leading to metabolic acidosis, neurological impairment, and multi-organ dysfunction.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Propionic Acidemia | Loss-of-function mutations in PCCA impair propionyl-CoA carboxylase activity, causing accumulation of propionyl-CoA and toxic metabolites. | ClinVar, OMIM |
| Methylmalonic Acidemia (secondary) | Deficient PCC activity can lead to secondary methylmalonic acid accumulation due to impaired conversion of propionyl-CoA. | OMIM |
| Cardiomyopathy (associated with PA) | Chronic metabolic toxicity from propionic acidemia contributes to cardiac dysfunction. | ClinVar, literature |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 12.5 | High |
| Kidney | 8.3 | Medium |
| Heart | 6.1 | Medium |
| Brain | 4.2 | Low |
| Skeletal Muscle | 3.8 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 (liver) | 14.2 | High expression |
| HEK293 (embryonic kidney) | 9.7 | Moderate expression |
| K562 (leukemia) | 5.1 | Low expression |
| SH-SY5Y (neuroblastoma) | 3.4 | Very low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.425G>A (p.Arg142Gln) | Missense | Common in PA patients | Reduced enzyme activity |
| c.1285C>T (p.Arg429*) | Nonsense | Reported | Loss of function |
| c.1840+1G>A | Splice site | Reported | Splicing defect, loss of function |
| c.2002C>T (p.Arg668Trp) | Missense | Rare | Impaired biotin binding |
Mutation functional classification
Loss of Function (LOF)
Most PCCA mutations cause loss of propionyl-CoA carboxylase activity, leading to propionic acidemia.
Gain of Function (GOF)
No gain-of-function mutations reported for PCCA.
Dominant Negative (DN)
No dominant-negative effects described; disease is autosomal recessive.
View complete mutation data:
Gene Ontology (GO)
| • propionyl-CoA carboxylase activity (GO:0004658) | • ATP binding (GO:0005524) |
| • biotin binding (GO:0009374) | • mitochondrion (GO:0005739) |
| • glycine catabolic process (GO:0006546) | • propionate catabolic process (GO:0019543) |
Pathways
• Propanoate metabolism (KEGG: hsa00640)
• Valine
• leucine and isoleucine degradation (KEGG: hsa00280)
• Metabolic pathways (KEGG: hsa01100)
Protein Summary
Propionyl-CoA carboxylase (PCC) is a heterododecamer composed of alpha (PCCA) and beta (PCCB) subunits. The alpha subunit contains the biotin carboxylase domain and the biotin carboxyl carrier domain, which binds biotin covalently. The enzyme requires biotin as a cofactor and ATP for activity. PCC catalyzes the carboxylation of propionyl-CoA to D-methylmalonyl-CoA, a key step in the catabolism of odd-chain fatty acids, branched-chain amino acids (isoleucine, valine, methionine, threonine), and cholesterol side chains. Deficiency leads to propionic acidemia.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| PCCA Knockout HEK293 Cell Line | EDJ-KQ13916 | Human | 5095 | Details Get a Quote |
| PCCA Knockout HeLa Cell Line | EDJ-KQ18065 | Human | 5095 | Details Get a Quote |
| PCCA Knockout A-549 Cell Line | EDJ-KQ45006 | Human | 5095 | Details Get a Quote |
| PCCA Knockout HCT 116 Cell Line | EDJ-KQ45008 | Human | 5095 | Details Get a Quote |
| PCCA Knockout Hep-G2 Cell Line | EDJ-KZ383 | Human | 5095 | Details Get a Quote |
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