PCCA Gene - Propionyl-CoA Carboxylase Subunit Alpha

PCCA: Genetic Variants, Propionic Acidemia, and Metabolic Pathways

Gene Information Card

Symbol PCCA
Full Name Propionyl-CoA Carboxylase Subunit Alpha
Gene Type Protein coding
Chromosomal Location 13q32.3
NCBI Gene ID 5095 ncbi.nlm.nih.gov/gene/5095
Ensembl ID ENSG00000102316
UniProt ID P05165
OMIM ID 232000
HGNC ID 8653
Aliases PCCase alpha, PCC, PA, propionyl CoA carboxylase alpha

Description

The PCCA gene encodes the alpha subunit of propionyl-CoA carboxylase (PCC), a biotin-dependent mitochondrial enzyme that catalyzes the carboxylation of propionyl-CoA to D-methylmalonyl-CoA. This reaction is a critical step in the catabolism of branched-chain amino acids, odd-chain fatty acids, and cholesterol side chains. Mutations in PCCA cause propionic acidemia (PA), an autosomal recessive metabolic disorder characterized by accumulation of propionic acid and its derivatives, leading to metabolic acidosis, neurological impairment, and multi-organ dysfunction.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Propionic Acidemia Loss-of-function mutations in PCCA impair propionyl-CoA carboxylase activity, causing accumulation of propionyl-CoA and toxic metabolites. ClinVar, OMIM
Methylmalonic Acidemia (secondary) Deficient PCC activity can lead to secondary methylmalonic acid accumulation due to impaired conversion of propionyl-CoA. OMIM
Cardiomyopathy (associated with PA) Chronic metabolic toxicity from propionic acidemia contributes to cardiac dysfunction. ClinVar, literature

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 12.5 High
Kidney 8.3 Medium
Heart 6.1 Medium
Brain 4.2 Low
Skeletal Muscle 3.8 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 (liver) 14.2 High expression
HEK293 (embryonic kidney) 9.7 Moderate expression
K562 (leukemia) 5.1 Low expression
SH-SY5Y (neuroblastoma) 3.4 Very low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.425G>A (p.Arg142Gln) Missense Common in PA patients Reduced enzyme activity
c.1285C>T (p.Arg429*) Nonsense Reported Loss of function
c.1840+1G>A Splice site Reported Splicing defect, loss of function
c.2002C>T (p.Arg668Trp) Missense Rare Impaired biotin binding
Mutation functional classification

Loss of Function (LOF)

Most PCCA mutations cause loss of propionyl-CoA carboxylase activity, leading to propionic acidemia.

Gain of Function (GOF)

No gain-of-function mutations reported for PCCA.

Dominant Negative (DN)

No dominant-negative effects described; disease is autosomal recessive.

Pathways

Propanoate metabolism (KEGG: hsa00640)
Valine
leucine and isoleucine degradation (KEGG: hsa00280)
Metabolic pathways (KEGG: hsa01100)

Protein Summary

Propionyl-CoA carboxylase (PCC) is a heterododecamer composed of alpha (PCCA) and beta (PCCB) subunits. The alpha subunit contains the biotin carboxylase domain and the biotin carboxyl carrier domain, which binds biotin covalently. The enzyme requires biotin as a cofactor and ATP for activity. PCC catalyzes the carboxylation of propionyl-CoA to D-methylmalonyl-CoA, a key step in the catabolism of odd-chain fatty acids, branched-chain amino acids (isoleucine, valine, methionine, threonine), and cholesterol side chains. Deficiency leads to propionic acidemia.

Related Products

Product name Cat.No. Species Gene ID
PCCA Knockout HEK293 Cell Line EDJ-KQ13916 Human 5095 Details Get a Quote
PCCA Knockout HeLa Cell Line EDJ-KQ18065 Human 5095 Details Get a Quote
PCCA Knockout A-549 Cell Line EDJ-KQ45006 Human 5095 Details Get a Quote
PCCA Knockout HCT 116 Cell Line EDJ-KQ45008 Human 5095 Details Get a Quote
PCCA Knockout Hep-G2 Cell Line EDJ-KZ383 Human 5095 Details Get a Quote
Displaying Records 1 To 5 Of 5 Records
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