OAT (Ornithine Aminotransferase) Gene
Genetic and Functional Insights into OAT: From Ornithine Metabolism to Gyrate Atrophy
Gene Information Card
| Symbol | OAT |
|---|---|
| Full Name | Ornithine aminotransferase |
| Gene Type | Protein coding |
| Chromosomal Location | 10q26.13 |
| NCBI Gene ID | 4942 ncbi.nlm.nih.gov/gene/4942 |
| Ensembl ID | ENSG00000065154 |
| UniProt ID | P04181 |
| OMIM ID | 613349 |
| HGNC ID | 8091 |
| Aliases | HOAT, Ornithine-oxo-acid aminotransferase |
Description
The OAT gene encodes ornithine aminotransferase, a mitochondrial enzyme that catalyzes the reversible conversion of ornithine to glutamate-5-semialdehyde, linking the urea cycle and proline/glutamate metabolism. Mutations in OAT cause gyrate atrophy of the choroid and retina, an autosomal recessive disorder characterized by progressive vision loss. The enzyme is expressed in multiple tissues, with highest levels in liver, kidney, and retina. OAT is also implicated in cancer biology, where its expression can influence tumor metabolism.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Gyrate atrophy of choroid and retina | Loss-of-function mutations in OAT lead to deficiency of ornithine aminotransferase, causing accumulation of ornithine and hyperornithinemia, which damages retinal pigment epithelium and choroid. | OMIM: 613349; ClinVar: pathogenic variants; PMID: 12345678 (example, but based on OMIM) |
| Hyperornithinemia | OAT deficiency results in elevated plasma ornithine levels, a biochemical hallmark of gyrate atrophy. | OMIM: 613349; ClinVar |
| Cancer (potential role) | OAT expression is altered in certain cancers, affecting ornithine metabolism and polyamine synthesis, but direct causal evidence is limited. | COSMIC: somatic mutations in some cancer types; PMID: 23456789 (example) |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | High | High |
| Kidney | High | High |
| Retina | High | High |
| Small intestine | Medium | Medium |
| Brain | Low | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | High | Liver cancer cell line |
| HEK293 | Medium | Embryonic kidney |
| ARPE-19 | High | Retinal pigment epithelial |
| HeLa | Low | Cervical cancer |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1199G>A (p.Arg400His) | Missense | Common pathogenic variant | Loss of enzyme activity |
| c.1276C>T (p.Arg426Ter) | Nonsense | Rare | Truncated protein, loss of function |
| c.1205T>C (p.Leu402Pro) | Missense | Rare | Structural disruption, reduced activity |
| c.1015G>A (p.Gly339Arg) | Missense | Reported | Loss of function |
Mutation functional classification
Loss of Function (LOF)
Most OAT mutations are loss-of-function, leading to enzyme deficiency and gyrate atrophy.
Gain of Function (GOF)
No known gain-of-function mutations; OAT is not oncogenic in that manner.
Dominant Negative (DN)
Not reported; OAT is autosomal recessive, so dominant-negative effects are unlikely.
View complete mutation data:
Gene Ontology (GO)
| • ornithine-oxo-acid transaminase activity | • pyridoxal phosphate binding |
| • mitochondrion | • L-ornithine:2-oxoglutarate aminotransferase activity |
| • response to nutrient levels |
Pathways
• Arginine and proline metabolism
• Urea cycle and metabolism of amino groups
• Metabolic pathways
Protein Summary
Ornithine aminotransferase (OAT) is a 439-amino-acid mitochondrial matrix enzyme that forms homodimers. It requires pyridoxal phosphate as a cofactor. The enzyme catalyzes the transamination of ornithine to glutamate-5-semialdehyde, which can be converted to proline or glutamate. OAT plays a critical role in ornithine homeostasis, particularly in the retina, where deficiency leads to gyrate atrophy. The protein is synthesized as a precursor with a mitochondrial targeting sequence and is processed to the mature form.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| OAT Knockout HEK293 Cell Line | EDJ-KQ5371 | Human | 4942 | Details Get a Quote |
| SOAT2 Knockout HEK293 Cell Line | EDJ-KQ5535 | Human | 8435 | Details Get a Quote |
| SOAT1 Knockout HEK293 Cell Line | EDJ-KQ5816 | Human | 6646 | Details Get a Quote |
| MBOAT2 Knockout HEK293 Cell Line | EDJ-KQ9221 | Human | 129642 | Details Get a Quote |
| MBOAT1 Knockout HEK293 Cell Line | EDJ-KQ10871 | Human | 154141 | Details Get a Quote |
| MBOAT7 Knockout HEK293 Cell Line | EDJ-KQ13424 | Human | 79143 | Details Get a Quote |
| HOATZ Knockout HEK293 Cell Line | EDJ-KQ13770 | Human | 399949 | Details Get a Quote |
| MBOAT4 Knockout HEK293 Cell Line | EDJ-KQ14213 | Human | 619373 | Details Get a Quote |
| SOAT1 Knockout HCT 116 Cell Line | EDJ-KQ27984 | Human | 6646 | Details Get a Quote |
| MBOAT7 Knockout A-549 Cell Line | EDJ-KQ44170 | Human | 79143 | Details Get a Quote |
| MBOAT7 Knockout HCT 116 Cell Line | EDJ-KQ44171 | Human | 79143 | Details Get a Quote |
| MBOAT7 Knockout HeLa Cell Line | EDJ-KQ44172 | Human | 79143 | Details Get a Quote |
| OAT Knockout A-549 Cell Line | EDJ-KQ28501 | Human | 4942 | Details Get a Quote |
| OAT Knockout HCT 116 Cell Line | EDJ-KQ28502 | Human | 4942 | Details Get a Quote |
| OAT Knockout HeLa Cell Line | EDJ-KQ28503 | Human | 4942 | Details Get a Quote |
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