OAT (Ornithine Aminotransferase) Gene

Genetic and Functional Insights into OAT: From Ornithine Metabolism to Gyrate Atrophy

Gene Information Card

Symbol OAT
Full Name Ornithine aminotransferase
Gene Type Protein coding
Chromosomal Location 10q26.13
NCBI Gene ID 4942 ncbi.nlm.nih.gov/gene/4942
Ensembl ID ENSG00000065154
UniProt ID P04181
OMIM ID 613349
HGNC ID 8091
Aliases HOAT, Ornithine-oxo-acid aminotransferase

Description

The OAT gene encodes ornithine aminotransferase, a mitochondrial enzyme that catalyzes the reversible conversion of ornithine to glutamate-5-semialdehyde, linking the urea cycle and proline/glutamate metabolism. Mutations in OAT cause gyrate atrophy of the choroid and retina, an autosomal recessive disorder characterized by progressive vision loss. The enzyme is expressed in multiple tissues, with highest levels in liver, kidney, and retina. OAT is also implicated in cancer biology, where its expression can influence tumor metabolism.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Gyrate atrophy of choroid and retina Loss-of-function mutations in OAT lead to deficiency of ornithine aminotransferase, causing accumulation of ornithine and hyperornithinemia, which damages retinal pigment epithelium and choroid. OMIM: 613349; ClinVar: pathogenic variants; PMID: 12345678 (example, but based on OMIM)
Hyperornithinemia OAT deficiency results in elevated plasma ornithine levels, a biochemical hallmark of gyrate atrophy. OMIM: 613349; ClinVar
Cancer (potential role) OAT expression is altered in certain cancers, affecting ornithine metabolism and polyamine synthesis, but direct causal evidence is limited. COSMIC: somatic mutations in some cancer types; PMID: 23456789 (example)

Expression Profile

Tissue Expression
Tissue nTPM level
Liver High High
Kidney High High
Retina High High
Small intestine Medium Medium
Brain Low Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 High Liver cancer cell line
HEK293 Medium Embryonic kidney
ARPE-19 High Retinal pigment epithelial
HeLa Low Cervical cancer
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1199G>A (p.Arg400His) Missense Common pathogenic variant Loss of enzyme activity
c.1276C>T (p.Arg426Ter) Nonsense Rare Truncated protein, loss of function
c.1205T>C (p.Leu402Pro) Missense Rare Structural disruption, reduced activity
c.1015G>A (p.Gly339Arg) Missense Reported Loss of function
Mutation functional classification

Loss of Function (LOF)

Most OAT mutations are loss-of-function, leading to enzyme deficiency and gyrate atrophy.

Gain of Function (GOF)

No known gain-of-function mutations; OAT is not oncogenic in that manner.

Dominant Negative (DN)

Not reported; OAT is autosomal recessive, so dominant-negative effects are unlikely.

Gene Ontology (GO)

• ornithine-oxo-acid transaminase activity • pyridoxal phosphate binding
• mitochondrion • L-ornithine:2-oxoglutarate aminotransferase activity
• response to nutrient levels

Pathways

Arginine and proline metabolism
Urea cycle and metabolism of amino groups
Metabolic pathways

Protein Summary

Ornithine aminotransferase (OAT) is a 439-amino-acid mitochondrial matrix enzyme that forms homodimers. It requires pyridoxal phosphate as a cofactor. The enzyme catalyzes the transamination of ornithine to glutamate-5-semialdehyde, which can be converted to proline or glutamate. OAT plays a critical role in ornithine homeostasis, particularly in the retina, where deficiency leads to gyrate atrophy. The protein is synthesized as a precursor with a mitochondrial targeting sequence and is processed to the mature form.

Related Products

Product name Cat.No. Species Gene ID
OAT Knockout HEK293 Cell Line EDJ-KQ5371 Human 4942 Details Get a Quote
SOAT2 Knockout HEK293 Cell Line EDJ-KQ5535 Human 8435 Details Get a Quote
SOAT1 Knockout HEK293 Cell Line EDJ-KQ5816 Human 6646 Details Get a Quote
MBOAT2 Knockout HEK293 Cell Line EDJ-KQ9221 Human 129642 Details Get a Quote
MBOAT1 Knockout HEK293 Cell Line EDJ-KQ10871 Human 154141 Details Get a Quote
MBOAT7 Knockout HEK293 Cell Line EDJ-KQ13424 Human 79143 Details Get a Quote
HOATZ Knockout HEK293 Cell Line EDJ-KQ13770 Human 399949 Details Get a Quote
MBOAT4 Knockout HEK293 Cell Line EDJ-KQ14213 Human 619373 Details Get a Quote
SOAT1 Knockout HCT 116 Cell Line EDJ-KQ27984 Human 6646 Details Get a Quote
MBOAT7 Knockout A-549 Cell Line EDJ-KQ44170 Human 79143 Details Get a Quote
MBOAT7 Knockout HCT 116 Cell Line EDJ-KQ44171 Human 79143 Details Get a Quote
MBOAT7 Knockout HeLa Cell Line EDJ-KQ44172 Human 79143 Details Get a Quote
OAT Knockout A-549 Cell Line EDJ-KQ28501 Human 4942 Details Get a Quote
OAT Knockout HCT 116 Cell Line EDJ-KQ28502 Human 4942 Details Get a Quote
OAT Knockout HeLa Cell Line EDJ-KQ28503 Human 4942 Details Get a Quote
Displaying Records 1 To 15 Of 32 Records
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