NUDT12
Nudix Hydrolase 12: A Peroxisomal NADH Diphosphatase Involved in Coenzyme A and NAD Metabolism
Gene Information Card
| Symbol | NUDT12 |
|---|---|
| Full Name | nudix hydrolase 12 |
| Gene Type | protein-coding |
| Chromosomal Location | 5q21.1 |
| NCBI Gene ID | 83594 ncbi.nlm.nih.gov/gene/83594 |
| Ensembl ID | ENSG00000112874 |
| UniProt ID | Q9BQG2 |
| OMIM ID | 609230 |
| HGNC ID | 29923 |
| Aliases | hNUDT12, DKFZp434B0328, FLJ20607 |
Description
NUDT12 encodes a member of the Nudix hydrolase family, characterized by a conserved Nudix box motif (GX5EX7REUXEEXGU, where U is a hydrophobic residue). The protein localizes to peroxisomes and catalyzes the hydrolysis of NADH, NADPH, and Coenzyme A (CoA) derivatives, including CoA esters and oxidized CoA (CoAS-SG). It plays a role in peroxisomal nucleotide and cofactor homeostasis, potentially regulating NAD+/NADH ratios and CoA levels. NUDT12 is also implicated in cellular stress responses and has been linked to ciliopathies and cancer.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Retinitis pigmentosa (RP) | Loss-of-function mutations in NUDT12 disrupt peroxisomal NADH metabolism, leading to photoreceptor degeneration. | ClinVar, OMIM |
| Joubert syndrome | Biallelic NUDT12 variants impair ciliary function via altered nucleotide signaling. | ClinVar, OMIM |
| Hepatocellular carcinoma | Overexpression of NUDT12 may promote tumor growth by modulating CoA and NAD pools. | COSMIC, NCBI |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 12.5 | Medium |
| Kidney | 8.3 | Medium |
| Testis | 6.7 | Low |
| Retina | 15.2 | High |
| Brain | 4.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 14.8 | Hepatocellular carcinoma cell line |
| HEK293 | 9.2 | Embryonic kidney cells |
| ARPE-19 | 18.5 | Retinal pigment epithelial cells |
| HeLa | 6.3 | Cervical cancer cells |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1042C>T (p.Arg348*) | Nonsense | <0.01% | Loss of function; associated with retinitis pigmentosa |
| c.143G>A (p.Arg48His) | Missense | 0.02% | Reduced enzymatic activity; linked to Joubert syndrome |
| c.788_789del (p.Val263Alafs*12) | Frameshift | <0.01% | Loss of function; retinal degeneration |
Mutation functional classification
Loss of Function (LOF)
Nonsense, frameshift, and missense mutations that reduce or abolish NADH/CoA hydrolase activity, leading to peroxisomal dysfunction and ciliopathies.
Gain of Function (GOF)
Not reported; no activating mutations described in literature.
Dominant Negative (DN)
Not reported; no dominant-negative mechanisms documented.
View complete mutation data:
Gene Ontology (GO)
| • NADH diphosphatase activity | • NADPH diphosphatase activity |
| • CoA hydrolase activity | • peroxisome |
| • nucleotide metabolism | • response to oxidative stress |
Pathways
• Peroxisomal NAD metabolism
• Coenzyme A biosynthesis and recycling
• Purine nucleotide metabolism
Protein Summary
NUDT12 is a 45 kDa peroxisomal protein containing a Nudix hydrolase domain. It preferentially hydrolyzes NADH, NADPH, and CoA derivatives, releasing nicotinamide mononucleotide (NMN) or 4'-phosphopantetheine. The enzyme is essential for maintaining peroxisomal redox balance and cofactor homeostasis. Structural studies reveal a conserved catalytic core with a metal-binding site (typically Mg2+ or Mn2+). Post-translational modifications include phosphorylation at Ser-123, which may regulate activity. NUDT12 interacts with peroxisomal membrane proteins and is involved in ciliary signaling.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| NUDT12 Knockout HEK293 Cell Line | EDJ-KQ9867 | Human | 83594 | Details Get a Quote |
| NUDT12 Knockout A-549 Cell Line | EDJ-KQ36736 | Human | 83594 | Details Get a Quote |
| NUDT12 Knockout HCT 116 Cell Line | EDJ-KQ36737 | Human | 83594 | Details Get a Quote |
| NUDT12 Knockout HeLa Cell Line | EDJ-KQ36738 | Human | 83594 | Details Get a Quote |
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