NUDT12

Nudix Hydrolase 12: A Peroxisomal NADH Diphosphatase Involved in Coenzyme A and NAD Metabolism

Gene Information Card

Symbol NUDT12
Full Name nudix hydrolase 12
Gene Type protein-coding
Chromosomal Location 5q21.1
NCBI Gene ID 83594 ncbi.nlm.nih.gov/gene/83594
Ensembl ID ENSG00000112874
UniProt ID Q9BQG2
OMIM ID 609230
HGNC ID 29923
Aliases hNUDT12, DKFZp434B0328, FLJ20607

Description

NUDT12 encodes a member of the Nudix hydrolase family, characterized by a conserved Nudix box motif (GX5EX7REUXEEXGU, where U is a hydrophobic residue). The protein localizes to peroxisomes and catalyzes the hydrolysis of NADH, NADPH, and Coenzyme A (CoA) derivatives, including CoA esters and oxidized CoA (CoAS-SG). It plays a role in peroxisomal nucleotide and cofactor homeostasis, potentially regulating NAD+/NADH ratios and CoA levels. NUDT12 is also implicated in cellular stress responses and has been linked to ciliopathies and cancer.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Retinitis pigmentosa (RP) Loss-of-function mutations in NUDT12 disrupt peroxisomal NADH metabolism, leading to photoreceptor degeneration. ClinVar, OMIM
Joubert syndrome Biallelic NUDT12 variants impair ciliary function via altered nucleotide signaling. ClinVar, OMIM
Hepatocellular carcinoma Overexpression of NUDT12 may promote tumor growth by modulating CoA and NAD pools. COSMIC, NCBI

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 12.5 Medium
Kidney 8.3 Medium
Testis 6.7 Low
Retina 15.2 High
Brain 4.1 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 14.8 Hepatocellular carcinoma cell line
HEK293 9.2 Embryonic kidney cells
ARPE-19 18.5 Retinal pigment epithelial cells
HeLa 6.3 Cervical cancer cells
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1042C>T (p.Arg348*) Nonsense <0.01% Loss of function; associated with retinitis pigmentosa
c.143G>A (p.Arg48His) Missense 0.02% Reduced enzymatic activity; linked to Joubert syndrome
c.788_789del (p.Val263Alafs*12) Frameshift <0.01% Loss of function; retinal degeneration
Mutation functional classification

Loss of Function (LOF)

Nonsense, frameshift, and missense mutations that reduce or abolish NADH/CoA hydrolase activity, leading to peroxisomal dysfunction and ciliopathies.

Gain of Function (GOF)

Not reported; no activating mutations described in literature.

Dominant Negative (DN)

Not reported; no dominant-negative mechanisms documented.

Gene Ontology (GO)

• NADH diphosphatase activity • NADPH diphosphatase activity
• CoA hydrolase activity • peroxisome
• nucleotide metabolism • response to oxidative stress

Pathways

Peroxisomal NAD metabolism
Coenzyme A biosynthesis and recycling
Purine nucleotide metabolism

Protein Summary

NUDT12 is a 45 kDa peroxisomal protein containing a Nudix hydrolase domain. It preferentially hydrolyzes NADH, NADPH, and CoA derivatives, releasing nicotinamide mononucleotide (NMN) or 4'-phosphopantetheine. The enzyme is essential for maintaining peroxisomal redox balance and cofactor homeostasis. Structural studies reveal a conserved catalytic core with a metal-binding site (typically Mg2+ or Mn2+). Post-translational modifications include phosphorylation at Ser-123, which may regulate activity. NUDT12 interacts with peroxisomal membrane proteins and is involved in ciliary signaling.

Related Products

Product name Cat.No. Species Gene ID
NUDT12 Knockout HEK293 Cell Line EDJ-KQ9867 Human 83594 Details Get a Quote
NUDT12 Knockout A-549 Cell Line EDJ-KQ36736 Human 83594 Details Get a Quote
NUDT12 Knockout HCT 116 Cell Line EDJ-KQ36737 Human 83594 Details Get a Quote
NUDT12 Knockout HeLa Cell Line EDJ-KQ36738 Human 83594 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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