NT5C1B-RDH14: A Readthrough Fusion Transcript with Potential Roles in Retinoid Metabolism and Nucleotide Homeostasis
A comprehensive biomedical overview of the NT5C1B-RDH14 gene, including genomic context, expression, and disease associations.
Gene Information Card
| Symbol | NT5C1B-RDH14 |
|---|---|
| Full Name | NT5C1B-RDH14 readthrough (NMD candidate) |
| Gene Type | Readthrough transcript (protein coding) |
| Chromosomal Location | 14q11.2 (GRCh38) |
| NCBI Gene ID | 100874080 ncbi.nlm.nih.gov/gene/100874080 |
| Ensembl ID | ENSG00000259803 |
| UniProt ID | Not available (predicted) |
| OMIM ID | Not available |
| HGNC ID | HGNC:49334 |
| Aliases | NT5C1B-RDH14 |
Description
NT5C1B-RDH14 is a readthrough transcript that arises from the natural fusion of two adjacent genes on chromosome 14: NT5C1B (5'-nucleotidase, cytosolic IB) and RDH14 (retinol dehydrogenase 14). This locus produces a chimeric mRNA that is predicted to be a candidate for nonsense-mediated decay (NMD), suggesting that the fusion transcript may not yield a stable protein product. The individual genes encode proteins involved in nucleotide metabolism (NT5C1B) and retinol metabolism (RDH14), respectively. The readthrough transcript is expressed in various tissues, but its functional significance remains largely unexplored. This gene is listed in the HGNC database as a readthrough locus, and its existence is supported by transcript evidence in Ensembl and NCBI.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| No specific disease association | Not established; readthrough transcript may be subject to NMD, limiting protein production. | No direct evidence from ClinVar or OMIM. |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Testis | Not available | Low expression (based on GTEx data via Ensembl) |
| Kidney | Not available | Moderate expression |
| Liver | Not available | Low expression |
| Brain | Not available | Low expression |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa | Not available | No specific data; expression inferred from tissue data. |
| HEK293 | Not available | No specific data. |
| K562 | Not available | No specific data. |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| No curated variants | Not applicable | Not available | No functional impact reported. |
Mutation functional classification
Loss of Function (LOF)
Not applicable; no functional protein product is known.
Gain of Function (GOF)
Not applicable.
Dominant Negative (DN)
Not applicable.
View complete mutation data:
Gene Ontology (GO)
| • Molecular function: not annotated | • Biological process: not annotated |
| • Cellular component: not annotated |
Pathways
• No specific pathways associated with the readthrough transcript. Individual genes may participate in nucleotide metabolism (NT5C1B) and retinol metabolism (RDH14).
Protein Summary
The NT5C1B-RDH14 readthrough transcript is predicted to encode a fusion protein that combines the N-terminal region of NT5C1B with the C-terminal region of RDH14. However, due to the presence of a premature stop codon, the transcript is a candidate for nonsense-mediated decay, and thus the protein may not be expressed in vivo. If expressed, the protein could potentially have altered enzymatic activities, but no experimental evidence is available.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| NT5C1B-RDH14 Knockout HEK293 Cell Line | EDJ-KQ52477 | Human | 100526794 | Details Get a Quote |
| NT5C1B-RDH14 Knockout HeLa Cell Line | EDJ-KQ60940 | Human | 100526794 | Details Get a Quote |
| NT5C1B-RDH14 Knockout A-549 Cell Line | EDJ-KQ69415 | Human | 100526794 | Details Get a Quote |
| NT5C1B-RDH14 Knockout HCT 116 Cell Line | EDJ-KQ77766 | Human | 100526794 | Details Get a Quote |
Displaying Records 1 To 4 Of 4 Records