NMNAT1 Gene: Nicotinamide Nucleotide Adenylyltransferase 1

Essential enzyme in NAD+ biosynthesis, linked to Leber congenital amaurosis and retinal degeneration.

Gene Information Card

Symbol NMNAT1
Full Name Nicotinamide Nucleotide Adenylyltransferase 1
Gene Type Protein coding
Chromosomal Location 1p36.22
NCBI Gene ID 64802 ncbi.nlm.nih.gov/gene/64802
Ensembl ID ENSG00000173614
UniProt ID Q9HAN9
OMIM ID 608700
HGNC ID 17877
Aliases PNAT1, C1orf42, MGC2615

Description

The NMNAT1 gene encodes nicotinamide nucleotide adenylyltransferase 1, a key enzyme in the biosynthesis of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the final step of NAD+ synthesis, transferring an adenylyl group from ATP to nicotinamide mononucleotide (NMN) to form NAD+. NMNAT1 is ubiquitously expressed but shows high activity in the retina, where it plays a critical role in photoreceptor survival and function. Mutations in NMNAT1 are associated with Leber congenital amaurosis type 9 (LCA9), a severe retinal dystrophy presenting in infancy. The enzyme is also implicated in axonal protection and cellular stress responses.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Leber congenital amaurosis 9 (LCA9) Biallelic loss-of-function mutations reduce NAD+ synthesis in retinal photoreceptors, leading to cell death and severe visual impairment. ClinVar, OMIM (608700)
Retinitis pigmentosa (rare cases) Some NMNAT1 mutations cause milder retinal degeneration, possibly due to partial enzyme activity loss. ClinVar, literature
Spinal muscular atrophy (SMA) modifier NMNAT1 overexpression can protect motor neurons in SMA models, but mutations are not a primary cause. Experimental evidence (not clinical)

Expression Profile

Tissue Expression
Tissue nTPM level
Heart 8.2 Medium
Liver 6.5 Low
Kidney 7.1 Low
Brain 9.3 Medium
Retina 12.4 High
Testis 10.1 Medium
Cell Line Expression
Cell Line nTPM Notes
HeLa 8.5 Cervical cancer cell line
HEK293 7.9 Embryonic kidney cells
SH-SY5Y 9.0 Neuroblastoma cells
ARPE-19 11.2 Retinal pigment epithelial cells
HepG2 6.8 Liver cancer cells
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.769G>A (p.Glu257Lys) Missense Rare (found in LCA9 families) Reduced enzyme activity, leading to photoreceptor degeneration.
c.500A>G (p.Tyr167Cys) Missense Rare Impaired NAD+ synthesis, associated with LCA9.
c.238T>C (p.Ser80Pro) Missense Rare Loss of function, severe retinal phenotype.
c.1A>G (p.Met1?) Start codon loss Very rare Complete loss of protein, likely severe LCA.
Mutation functional classification

Loss of Function (LOF)

Most NMNAT1 mutations are loss-of-function, reducing or abolishing enzyme activity, leading to NAD+ deficiency in retinal cells.

Gain of Function (GOF)

No evidence of gain-of-function mutations; all reported variants are loss-of-function.

Dominant Negative (DN)

No dominant-negative effects reported; disease is inherited in an autosomal recessive manner.

Pathways

NAD+ biosynthesis pathway (nicotinamide adenine dinucleotide metabolism)
Nicotinate and nicotinamide metabolism (KEGG:00760)
Axonal protection pathway (Wallerian degeneration)

Protein Summary

NMNAT1 is a 279-amino acid protein with a molecular weight of approximately 32 kDa. It belongs to the nucleotidyltransferase family and contains a conserved motif for ATP and NMN binding. The enzyme is localized in the nucleus and cytoplasm, with high expression in the retina. It catalyzes the formation of NAD+ from ATP and NMN, a rate-limiting step in NAD+ biosynthesis. NMNAT1 also has chaperone-like activity and can protect axons from degeneration. Mutations that reduce its enzymatic activity lead to photoreceptor cell death, underlying LCA9.

Related Products

Product name Cat.No. Species Gene ID
NMNAT1 Knockout HEK293 Cell Line EDJ-KQ14445 Human 64802 Details Get a Quote
NMNAT1 Knockout A-549 Cell Line EDJ-KQ44664 Human 64802 Details Get a Quote
NMNAT1 Knockout HeLa Cell Line EDJ-KQ44665 Human 64802 Details Get a Quote
NMNAT1 Knockout HCT 116 Cell Line EDJ-KQ26280 Human 64802 Details Get a Quote
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