NMNAT1 Gene: Nicotinamide Nucleotide Adenylyltransferase 1
Essential enzyme in NAD+ biosynthesis, linked to Leber congenital amaurosis and retinal degeneration.
Gene Information Card
| Symbol | NMNAT1 |
|---|---|
| Full Name | Nicotinamide Nucleotide Adenylyltransferase 1 |
| Gene Type | Protein coding |
| Chromosomal Location | 1p36.22 |
| NCBI Gene ID | 64802 ncbi.nlm.nih.gov/gene/64802 |
| Ensembl ID | ENSG00000173614 |
| UniProt ID | Q9HAN9 |
| OMIM ID | 608700 |
| HGNC ID | 17877 |
| Aliases | PNAT1, C1orf42, MGC2615 |
Description
The NMNAT1 gene encodes nicotinamide nucleotide adenylyltransferase 1, a key enzyme in the biosynthesis of nicotinamide adenine dinucleotide (NAD+). This enzyme catalyzes the final step of NAD+ synthesis, transferring an adenylyl group from ATP to nicotinamide mononucleotide (NMN) to form NAD+. NMNAT1 is ubiquitously expressed but shows high activity in the retina, where it plays a critical role in photoreceptor survival and function. Mutations in NMNAT1 are associated with Leber congenital amaurosis type 9 (LCA9), a severe retinal dystrophy presenting in infancy. The enzyme is also implicated in axonal protection and cellular stress responses.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Leber congenital amaurosis 9 (LCA9) | Biallelic loss-of-function mutations reduce NAD+ synthesis in retinal photoreceptors, leading to cell death and severe visual impairment. | ClinVar, OMIM (608700) |
| Retinitis pigmentosa (rare cases) | Some NMNAT1 mutations cause milder retinal degeneration, possibly due to partial enzyme activity loss. | ClinVar, literature |
| Spinal muscular atrophy (SMA) modifier | NMNAT1 overexpression can protect motor neurons in SMA models, but mutations are not a primary cause. | Experimental evidence (not clinical) |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Heart | 8.2 | Medium |
| Liver | 6.5 | Low |
| Kidney | 7.1 | Low |
| Brain | 9.3 | Medium |
| Retina | 12.4 | High |
| Testis | 10.1 | Medium |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa | 8.5 | Cervical cancer cell line |
| HEK293 | 7.9 | Embryonic kidney cells |
| SH-SY5Y | 9.0 | Neuroblastoma cells |
| ARPE-19 | 11.2 | Retinal pigment epithelial cells |
| HepG2 | 6.8 | Liver cancer cells |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.769G>A (p.Glu257Lys) | Missense | Rare (found in LCA9 families) | Reduced enzyme activity, leading to photoreceptor degeneration. |
| c.500A>G (p.Tyr167Cys) | Missense | Rare | Impaired NAD+ synthesis, associated with LCA9. |
| c.238T>C (p.Ser80Pro) | Missense | Rare | Loss of function, severe retinal phenotype. |
| c.1A>G (p.Met1?) | Start codon loss | Very rare | Complete loss of protein, likely severe LCA. |
Mutation functional classification
Loss of Function (LOF)
Most NMNAT1 mutations are loss-of-function, reducing or abolishing enzyme activity, leading to NAD+ deficiency in retinal cells.
Gain of Function (GOF)
No evidence of gain-of-function mutations; all reported variants are loss-of-function.
Dominant Negative (DN)
No dominant-negative effects reported; disease is inherited in an autosomal recessive manner.
View complete mutation data:
Gene Ontology (GO)
Pathways
• NAD+ biosynthesis pathway (nicotinamide adenine dinucleotide metabolism)
• Nicotinate and nicotinamide metabolism (KEGG:00760)
• Axonal protection pathway (Wallerian degeneration)
Protein Summary
NMNAT1 is a 279-amino acid protein with a molecular weight of approximately 32 kDa. It belongs to the nucleotidyltransferase family and contains a conserved motif for ATP and NMN binding. The enzyme is localized in the nucleus and cytoplasm, with high expression in the retina. It catalyzes the formation of NAD+ from ATP and NMN, a rate-limiting step in NAD+ biosynthesis. NMNAT1 also has chaperone-like activity and can protect axons from degeneration. Mutations that reduce its enzymatic activity lead to photoreceptor cell death, underlying LCA9.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| NMNAT1 Knockout HEK293 Cell Line | EDJ-KQ14445 | Human | 64802 | Details Get a Quote |
| NMNAT1 Knockout A-549 Cell Line | EDJ-KQ44664 | Human | 64802 | Details Get a Quote |
| NMNAT1 Knockout HeLa Cell Line | EDJ-KQ44665 | Human | 64802 | Details Get a Quote |
| NMNAT1 Knockout HCT 116 Cell Line | EDJ-KQ26280 | Human | 64802 | Details Get a Quote |
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