NFKBIA (NFKB Inhibitor Alpha): A Master Regulator of NF-κB Signaling in Immunity and Cancer

Explore the NFKBIA gene, its protein product IκBα, associated diseases, expression patterns, mutations, and key pathways.

Gene Information Card

Symbol NFKBIA
Full Name NFKB inhibitor alpha
Gene Type protein coding
Chromosomal Location 14q13.2
NCBI Gene ID 4792 ncbi.nlm.nih.gov/gene/4792
Ensembl ID ENSG00000100906
UniProt ID P25963
OMIM ID 164008
HGNC ID 7797
Aliases IKBA, MAD-3, NFKBI

Description

The NFKBIA gene encodes the protein IκBα (nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha), a member of the IκB family. IκBα is a key cytoplasmic inhibitor of the NF-κB transcription factor complex. In unstimulated cells, IκBα binds to NF-κB dimers (typically p50/p65) and sequesters them in the cytoplasm, preventing their nuclear translocation and DNA binding. Upon stimulation by various signals (e.g., cytokines, pathogens, stress), IκBα is phosphorylated by the IKK complex, ubiquitinated, and degraded by the proteasome, allowing NF-κB to enter the nucleus and activate transcription of target genes involved in immune response, inflammation, cell survival, and proliferation. Thus, NFKBIA is a critical negative regulator of NF-κB signaling.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Anhidrotic ectodermal dysplasia with T-cell immunodeficiency (EDA-ID) Loss-of-function mutations in NFKBIA impair IκBα function, leading to constitutive NF-κB activation. This disrupts normal development of ectodermal tissues and immune cell function, particularly T-cell responses. OMIM #612132; ClinVar; PMID: 17952090
Infections (severe, recurrent) Impaired NF-κB regulation due to NFKBIA mutations leads to defective immune responses, increasing susceptibility to bacterial, viral, and fungal infections. OMIM #612132; ClinVar
Hepatocellular carcinoma NFKBIA promoter methylation or loss of expression leads to increased NF-κB activity, promoting tumor cell proliferation and survival. COSMIC; PMID: 26576653
Breast cancer Altered NFKBIA expression (often reduced) contributes to constitutive NF-κB activation, associated with tumor progression and poor prognosis. COSMIC; PMID: 21779547
Hodgkin lymphoma NFKBIA mutations or deletions can lead to constitutive NF-κB activation, a hallmark of Hodgkin/Reed-Sternberg cells. COSMIC; PMID: 19531561
Melanoma Loss of NFKBIA expression or function enhances NF-κB signaling, promoting tumor invasion and metastasis. COSMIC; PMID: 17699744

Expression Profile

Tissue Expression
Tissue nTPM level
Whole blood 12.9 Medium
Lymph node 11.8 Medium
Spleen 10.5 Medium
Bone marrow 9.8 Medium
Lung 8.7 Low
Liver 7.2 Low
Brain 6.5 Low
Heart 5.9 Low
Cell Line Expression
Cell Line nTPM Notes
HeLa (cervical cancer) 15.2 High expression; NF-κB pathway active
K-562 (leukemia) 13.4 High expression; involved in immune signaling
A549 (lung cancer) 10.1 Moderate expression
MCF7 (breast cancer) 8.9 Moderate expression
HepG2 (liver cancer) 7.8 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
p.Ser32Ile (c.95G>T) Missense Rare (germline) Loss of phosphorylation site, preventing IκBα degradation and leading to constitutive NF-κB activation; associated with EDA-ID.
p.Ser36Ile (c.107G>T) Missense Rare (germline) Similar to Ser32Ile; impairs signal-induced degradation.
p.Trp11Ter (c.33G>A) Nonsense Rare (germline) Truncated protein, loss of function; causes EDA-ID.
c.94_96del (p.Ser32del) Deletion Rare (somatic) In-frame deletion of Ser32, affecting phosphorylation; seen in some cancers.
c.89A>G (p.Tyr30Cys) Missense Somatic (rare) Alters IκBα structure, possibly affecting binding to NF-κB; reported in lymphoma.
Promoter methylation Epigenetic Frequent in cancers Silences NFKBIA expression, leading to increased NF-κB activity; observed in hepatocellular carcinoma and others.
Mutation functional classification

Loss of Function (LOF)

Loss-of-function mutations (e.g., nonsense, frameshift, or promoter methylation) reduce or abolish IκBα protein expression or its ability to inhibit NF-κB, leading to constitutive NF-κB activation. This is oncogenic in many cancers and causes immunodeficiency in germline cases.

Gain of Function (GOF)

Gain-of-function mutations are rare and not well-documented. Some missense mutations might stabilize IκBα, leading to excessive inhibition of NF-κB, but such variants are not clinically characterized.

Dominant Negative (DN)

Certain missense mutations (e.g., Ser32Ile) act in a dominant-negative manner: the mutant IκBα cannot be phosphorylated and degraded, thus sequestering NF-κB in the cytoplasm even upon stimulation, but also interfering with the function of the wild-type allele in heterozygous state.

Gene Ontology (GO)

• protein binding • NF-kappaB binding
• ubiquitin protein ligase binding • signal transducer activity
• cytoplasm • nucleus
• cytosol • I-kappaB/NF-kappaB complex
• negative regulation of NF-kappaB transcription factor activity • regulation of inflammatory response
• immune response • apoptotic process
• response to lipopolysaccharide

Pathways

NF-kappaB signaling pathway
Toll-like receptor signaling pathway
TNF signaling pathway
B cell receptor signaling pathway
T cell receptor signaling pathway
Cytokine-cytokine receptor interaction
Apoptosis
Inflammatory mediator regulation of TRP channels

Protein Summary

IκBα (UniProt P25963) is a 317-amino acid protein with ankyrin repeat domains that mediate binding to NF-κB dimers. It contains N-terminal regulatory serines (Ser32 and Ser36) that are phosphorylated by IKK, and a C-terminal PEST domain involved in constitutive degradation. IκBα shuttles between nucleus and cytoplasm, but predominantly retains NF-κB in the cytoplasm. Its degradation is a key step in NF-κB activation. Mutations affecting its phosphorylation or degradation lead to dysregulated NF-κB signaling, with pathological consequences.

Related Products

Product name Cat.No. Species Gene ID
NFKBIA Knockout HEK293 Cell Line EDJ-KQ580 Human 4792 Details Get a Quote
NFKBIA Knockout A-549 Cell Line EDJ-KQ18991 Human 4792 Details Get a Quote
NFKBIA Knockout HCT 116 Cell Line EDJ-KQ18992 Human 4792 Details Get a Quote
NFKBIA Knockout HeLa Cell Line EDJ-KQ18993 Human 4792 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
Contact Us
*
*
*
*
How did you hear about us: