NFKBIA (NFKB Inhibitor Alpha): A Master Regulator of NF-κB Signaling in Immunity and Cancer
Explore the NFKBIA gene, its protein product IκBα, associated diseases, expression patterns, mutations, and key pathways.
Gene Information Card
| Symbol | NFKBIA |
|---|---|
| Full Name | NFKB inhibitor alpha |
| Gene Type | protein coding |
| Chromosomal Location | 14q13.2 |
| NCBI Gene ID | 4792 ncbi.nlm.nih.gov/gene/4792 |
| Ensembl ID | ENSG00000100906 |
| UniProt ID | P25963 |
| OMIM ID | 164008 |
| HGNC ID | 7797 |
| Aliases | IKBA, MAD-3, NFKBI |
Description
The NFKBIA gene encodes the protein IκBα (nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor, alpha), a member of the IκB family. IκBα is a key cytoplasmic inhibitor of the NF-κB transcription factor complex. In unstimulated cells, IκBα binds to NF-κB dimers (typically p50/p65) and sequesters them in the cytoplasm, preventing their nuclear translocation and DNA binding. Upon stimulation by various signals (e.g., cytokines, pathogens, stress), IκBα is phosphorylated by the IKK complex, ubiquitinated, and degraded by the proteasome, allowing NF-κB to enter the nucleus and activate transcription of target genes involved in immune response, inflammation, cell survival, and proliferation. Thus, NFKBIA is a critical negative regulator of NF-κB signaling.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Anhidrotic ectodermal dysplasia with T-cell immunodeficiency (EDA-ID) | Loss-of-function mutations in NFKBIA impair IκBα function, leading to constitutive NF-κB activation. This disrupts normal development of ectodermal tissues and immune cell function, particularly T-cell responses. | OMIM #612132; ClinVar; PMID: 17952090 |
| Infections (severe, recurrent) | Impaired NF-κB regulation due to NFKBIA mutations leads to defective immune responses, increasing susceptibility to bacterial, viral, and fungal infections. | OMIM #612132; ClinVar |
| Hepatocellular carcinoma | NFKBIA promoter methylation or loss of expression leads to increased NF-κB activity, promoting tumor cell proliferation and survival. | COSMIC; PMID: 26576653 |
| Breast cancer | Altered NFKBIA expression (often reduced) contributes to constitutive NF-κB activation, associated with tumor progression and poor prognosis. | COSMIC; PMID: 21779547 |
| Hodgkin lymphoma | NFKBIA mutations or deletions can lead to constitutive NF-κB activation, a hallmark of Hodgkin/Reed-Sternberg cells. | COSMIC; PMID: 19531561 |
| Melanoma | Loss of NFKBIA expression or function enhances NF-κB signaling, promoting tumor invasion and metastasis. | COSMIC; PMID: 17699744 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Whole blood | 12.9 | Medium |
| Lymph node | 11.8 | Medium |
| Spleen | 10.5 | Medium |
| Bone marrow | 9.8 | Medium |
| Lung | 8.7 | Low |
| Liver | 7.2 | Low |
| Brain | 6.5 | Low |
| Heart | 5.9 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa (cervical cancer) | 15.2 | High expression; NF-κB pathway active |
| K-562 (leukemia) | 13.4 | High expression; involved in immune signaling |
| A549 (lung cancer) | 10.1 | Moderate expression |
| MCF7 (breast cancer) | 8.9 | Moderate expression |
| HepG2 (liver cancer) | 7.8 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| p.Ser32Ile (c.95G>T) | Missense | Rare (germline) | Loss of phosphorylation site, preventing IκBα degradation and leading to constitutive NF-κB activation; associated with EDA-ID. |
| p.Ser36Ile (c.107G>T) | Missense | Rare (germline) | Similar to Ser32Ile; impairs signal-induced degradation. |
| p.Trp11Ter (c.33G>A) | Nonsense | Rare (germline) | Truncated protein, loss of function; causes EDA-ID. |
| c.94_96del (p.Ser32del) | Deletion | Rare (somatic) | In-frame deletion of Ser32, affecting phosphorylation; seen in some cancers. |
| c.89A>G (p.Tyr30Cys) | Missense | Somatic (rare) | Alters IκBα structure, possibly affecting binding to NF-κB; reported in lymphoma. |
| Promoter methylation | Epigenetic | Frequent in cancers | Silences NFKBIA expression, leading to increased NF-κB activity; observed in hepatocellular carcinoma and others. |
Mutation functional classification
Loss of Function (LOF)
Loss-of-function mutations (e.g., nonsense, frameshift, or promoter methylation) reduce or abolish IκBα protein expression or its ability to inhibit NF-κB, leading to constitutive NF-κB activation. This is oncogenic in many cancers and causes immunodeficiency in germline cases.
Gain of Function (GOF)
Gain-of-function mutations are rare and not well-documented. Some missense mutations might stabilize IκBα, leading to excessive inhibition of NF-κB, but such variants are not clinically characterized.
Dominant Negative (DN)
Certain missense mutations (e.g., Ser32Ile) act in a dominant-negative manner: the mutant IκBα cannot be phosphorylated and degraded, thus sequestering NF-κB in the cytoplasm even upon stimulation, but also interfering with the function of the wild-type allele in heterozygous state.
View complete mutation data:
Gene Ontology (GO)
| • protein binding | • NF-kappaB binding |
| • ubiquitin protein ligase binding | • signal transducer activity |
| • cytoplasm | • nucleus |
| • cytosol | • I-kappaB/NF-kappaB complex |
| • negative regulation of NF-kappaB transcription factor activity | • regulation of inflammatory response |
| • immune response | • apoptotic process |
| • response to lipopolysaccharide |
Pathways
• NF-kappaB signaling pathway
• Toll-like receptor signaling pathway
• TNF signaling pathway
• B cell receptor signaling pathway
• T cell receptor signaling pathway
• Cytokine-cytokine receptor interaction
• Apoptosis
• Inflammatory mediator regulation of TRP channels
Protein Summary
IκBα (UniProt P25963) is a 317-amino acid protein with ankyrin repeat domains that mediate binding to NF-κB dimers. It contains N-terminal regulatory serines (Ser32 and Ser36) that are phosphorylated by IKK, and a C-terminal PEST domain involved in constitutive degradation. IκBα shuttles between nucleus and cytoplasm, but predominantly retains NF-κB in the cytoplasm. Its degradation is a key step in NF-κB activation. Mutations affecting its phosphorylation or degradation lead to dysregulated NF-κB signaling, with pathological consequences.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| NFKBIA Knockout HEK293 Cell Line | EDJ-KQ580 | Human | 4792 | Details Get a Quote |
| NFKBIA Knockout A-549 Cell Line | EDJ-KQ18991 | Human | 4792 | Details Get a Quote |
| NFKBIA Knockout HCT 116 Cell Line | EDJ-KQ18992 | Human | 4792 | Details Get a Quote |
| NFKBIA Knockout HeLa Cell Line | EDJ-KQ18993 | Human | 4792 | Details Get a Quote |
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