NDST1 Gene: N-Deacetylase and N-Sulfotransferase 1

A key enzyme in heparan sulfate biosynthesis, implicated in developmental disorders and cancer.

Gene Information Card

Symbol NDST1
Full Name N-deacetylase and N-sulfotransferase 1
Gene Type protein coding
Chromosomal Location 5q33.1
NCBI Gene ID 3340 ncbi.nlm.nih.gov/gene/3340
Ensembl ID ENSG00000070614
UniProt ID P21648
OMIM ID 600817
HGNC ID 7680
Aliases HSST, MST1, NST1

Description

The NDST1 gene encodes a type II transmembrane protein that is a bifunctional enzyme with N-deacetylase and N-sulfotransferase activities. It is involved in the biosynthesis of heparan sulfate, a glycosaminoglycan found on cell surfaces and in the extracellular matrix. NDST1 catalyzes the removal of acetyl groups from N-acetylglucosamine residues and the subsequent transfer of sulfate groups, a critical step in the modification of heparan sulfate chains. This modification is essential for the binding of heparan sulfate to various ligands, including growth factors, cytokines, and extracellular matrix proteins, thereby regulating multiple signaling pathways. NDST1 is widely expressed and plays a crucial role in embryonic development, particularly in the formation of the brain, skeleton, and other organs. Mutations in NDST1 have been associated with a rare autosomal recessive disorder characterized by intellectual disability, developmental delay, and skeletal abnormalities. Additionally, altered NDST1 expression has been observed in various cancers, suggesting a role in tumor progression and metastasis.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Intellectual disability, autosomal recessive 55 Loss-of-function mutations lead to reduced heparan sulfate sulfation, affecting signaling pathways critical for neurodevelopment. ClinVar, OMIM
Skeletal abnormalities (e.g., short stature, brachydactyly) Impaired heparan sulfate modification disrupts bone morphogenetic protein (BMP) and fibroblast growth factor (FGF) signaling during skeletal development. OMIM, PubMed
Cancer (e.g., breast, colorectal, lung) Altered NDST1 expression affects heparan sulfate structure, influencing tumor cell proliferation, invasion, and angiogenesis. COSMIC, PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Brain High High
Lung Medium Medium
Liver Medium Medium
Kidney Medium Medium
Testis High High
Cell Line Expression
Cell Line nTPM Notes
HepG2 Medium Liver cancer cell line
A549 Medium Lung carcinoma cell line
MCF7 Low Breast cancer cell line
HEK293 High Embryonic kidney cells
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.2602C>T (p.Arg868Ter) Nonsense Rare Loss of function, likely leading to truncated protein
c.1990G>A (p.Gly664Arg) Missense Rare Potential impact on enzyme activity
c.1A>G (p.Met1Val) Start codon loss Rare Loss of translation initiation
Mutation functional classification

Loss of Function (LOF)

Most reported pathogenic mutations are loss-of-function, leading to reduced or absent enzyme activity, resulting in impaired heparan sulfate modification.

Gain of Function (GOF)

No clear gain-of-function mutations have been reported; overexpression in some cancers may act as an oncogenic event.

Dominant Negative (DN)

Not well established; some missense mutations might exert a dominant-negative effect if the mutant protein interferes with the wild-type enzyme in oligomeric complexes.

Gene Ontology (GO)

• N-acetylglucosamine deacetylase activity • N-sulfotransferase activity
• heparan sulfate proteoglycan biosynthetic process • Golgi membrane
• integral component of membrane

Pathways

Heparan sulfate biosynthesis
Glycosaminoglycan metabolism
Signaling by Receptor Tyrosine Kinases (e.g.
FGF
VEGF)

Protein Summary

NDST1 is a 882-amino acid type II transmembrane protein localized to the Golgi apparatus. It consists of a short cytoplasmic tail, a transmembrane domain, and a large luminal catalytic domain. The protein forms homodimers and heterodimers with other NDST family members. It catalyzes the deacetylation and N-sulfation of N-acetylglucosamine residues in heparan sulfate, a critical step in the maturation of heparan sulfate chains. This modification is essential for the binding of heparan sulfate to a variety of ligands, including growth factors and morphogens, thereby regulating developmental processes and adult tissue homeostasis. Mutations in NDST1 lead to a rare autosomal recessive disorder with intellectual disability and skeletal defects. In cancer, altered NDST1 expression can modify the tumor microenvironment and promote metastasis.

Related Products

Product name Cat.No. Species Gene ID
NDST1 Knockout HEK293 Cell Line EDJ-KQ4951 Human 3340 Details Get a Quote
NDST1 Knockout HeLa Cell Line EDJ-KQ26602 Human 3340 Details Get a Quote
NDST1 Knockout A-549 Cell Line EDJ-KQ27817 Human 3340 Details Get a Quote
NDST1 Knockout HCT 116 Cell Line EDJ-KQ27818 Human 3340 Details Get a Quote
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