ND5 (MT-ND5): Mitochondrial NADH Dehydrogenase Subunit 5 Gene

Essential subunit of mitochondrial Complex I, implicated in mitochondrial disorders and cancer

Gene Information Card

Symbol MT-ND5
Full Name Mitochondrially Encoded NADH:Ubiquinone Oxidoreductase Core Subunit 5
Gene Type Protein coding (mitochondrial)
Chromosomal Location Mitochondrial DNA (MT), position 12,337–14,148 (NC_012920.1)
NCBI Gene ID 4540 ncbi.nlm.nih.gov/gene/4540
Ensembl ID ENSG00000198786
UniProt ID P03915
OMIM ID 516005
HGNC ID 7455
Aliases MTND5, NADH dehydrogenase subunit 5, Complex I subunit 5

Description

MT-ND5 encodes the NADH dehydrogenase subunit 5, a core subunit of mitochondrial Complex I (NADH:ubiquinone oxidoreductase). Complex I is the first enzyme of the oxidative phosphorylation (OXPHOS) system, catalyzing the transfer of electrons from NADH to ubiquinone and contributing to the proton gradient across the inner mitochondrial membrane. ND5 is one of the seven mitochondrial-encoded subunits of Complex I and is essential for its assembly and catalytic activity. Mutations in MT-ND5 are associated with a spectrum of mitochondrial disorders, including Leber hereditary optic neuropathy (LHON), mitochondrial encephalomyopathy with lactic acidosis and stroke-like episodes (MELAS), Leigh syndrome, and other complex I deficiency phenotypes. Somatic mutations in MT-ND5 have also been reported in various cancers, potentially influencing tumor metabolism.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Leber Hereditary Optic Neuropathy (LHON) Pathogenic variants (e.g., m.13513G>A, m.13094T>C) impair Complex I activity, leading to retinal ganglion cell degeneration and optic nerve atrophy. ClinVar, OMIM
Mitochondrial Encephalomyopathy with Lactic Acidosis and Stroke-like Episodes (MELAS) Mutations such as m.13513G>A cause Complex I deficiency, resulting in impaired ATP production and neurological symptoms. ClinVar, OMIM
Leigh Syndrome Biallelic or heteroplasmic mutations (e.g., m.13513G>A, m.13042G>A) disrupt Complex I, leading to subacute necrotizing encephalomyelopathy. ClinVar, OMIM
Complex I Deficiency (Nuclear and Mitochondrial) Various MT-ND5 mutations reduce Complex I activity, causing multisystem disorders with lactic acidosis, hypotonia, and cardiomyopathy. OMIM, ClinVar
Cancer (somatic mutations) Somatic mutations in MT-ND5 have been identified in renal, breast, and colorectal tumors; may alter mitochondrial metabolism and apoptosis. COSMIC

Expression Profile

Tissue Expression
Tissue nTPM level
Heart High (nTPM ~ 2000) High mitochondrial content
Skeletal Muscle High (nTPM ~ 1800) High energy demand
Liver Moderate (nTPM ~ 1000) Metabolic activity
Brain Moderate (nTPM ~ 900) Neuronal energy requirement
Kidney Moderate (nTPM ~ 800) Active transport
Lung Low (nTPM ~ 300) Lower mitochondrial density
Cell Line Expression
Cell Line nTPM Notes
HeLa (cervical cancer) High Cancer cell line with active OXPHOS
MCF7 (breast cancer) Moderate Hormone-responsive, mitochondrial activity
A549 (lung cancer) Moderate Adenocarcinoma, mitochondrial function
HepG2 (liver cancer) High Hepatocyte metabolism
SH-SY5Y (neuroblastoma) Moderate Neuronal-like, mitochondrial dependence
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
m.13513G>A (p.D393N) Missense Rare (0.1-1% in mitochondrial disease cohorts) Associated with MELAS, LHON, and Leigh syndrome; reduces Complex I activity
m.13094T>C (p.V253A) Missense Rare LHON-associated; impairs Complex I assembly
m.13042G>A (p.A236T) Missense Rare Leigh syndrome; disrupts proton pumping
m.13514A>G (p.D393G) Missense Rare MELAS/LHON overlap; severe Complex I deficiency
m.12706T>C (p.F18L) Missense Rare LHON; mild effect on Complex I
Somatic mutations (e.g., c.1238A>G) Missense Variable in tumors Found in COSMIC; may alter tumor metabolism
Mutation functional classification

Loss of Function (LOF)

Most pathogenic MT-ND5 mutations cause partial or complete loss of Complex I activity, leading to reduced ATP production and increased oxidative stress. Examples include m.13513G>A and m.13094T>C.

Gain of Function (GOF)

No clear gain-of-function mutations have been reported; some variants may increase reactive oxygen species (ROS) production, but this is not a classic gain-of-function.

Dominant Negative (DN)

Mitochondrial heteroplasmy can result in a dominant-negative effect if the mutant mtDNA load exceeds a threshold, impairing Complex I assembly and function.

Pathways

• Oxidative phosphorylation (KEGG: hsa00190)
• Metabolic pathways (KEGG: hsa01100)
• Thermogenesis (KEGG: hsa04714)
• Parkinson disease (KEGG: hsa05012)
• Huntington disease (KEGG: hsa05016)
• Alzheimer disease (KEGG: hsa05010)

Protein Summary

The ND5 protein (UniProt P03915) is a 603-amino acid hydrophobic subunit of mitochondrial Complex I. It is embedded in the inner mitochondrial membrane and contributes to the proton translocation machinery. ND5 is part of the membrane arm of Complex I, where it participates in the conformational changes that drive proton pumping. The protein has 14 transmembrane helices and is essential for the assembly and stability of the holoenzyme. Defects in ND5 lead to impaired electron transfer and proton gradient generation, resulting in mitochondrial dysfunction. The protein is synthesized within mitochondria and requires the mitochondrial translation machinery for its production.

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