ND5 (MT-ND5): Mitochondrial NADH Dehydrogenase Subunit 5 Gene
Essential subunit of mitochondrial Complex I, implicated in mitochondrial disorders and cancer
Gene Information Card
| Symbol | MT-ND5 |
|---|---|
| Full Name | Mitochondrially Encoded NADH:Ubiquinone Oxidoreductase Core Subunit 5 |
| Gene Type | Protein coding (mitochondrial) |
| Chromosomal Location | Mitochondrial DNA (MT), position 12,337–14,148 (NC_012920.1) |
| NCBI Gene ID | 4540 ncbi.nlm.nih.gov/gene/4540 |
| Ensembl ID | ENSG00000198786 |
| UniProt ID | P03915 |
| OMIM ID | 516005 |
| HGNC ID | 7455 |
| Aliases | MTND5, NADH dehydrogenase subunit 5, Complex I subunit 5 |
Description
MT-ND5 encodes the NADH dehydrogenase subunit 5, a core subunit of mitochondrial Complex I (NADH:ubiquinone oxidoreductase). Complex I is the first enzyme of the oxidative phosphorylation (OXPHOS) system, catalyzing the transfer of electrons from NADH to ubiquinone and contributing to the proton gradient across the inner mitochondrial membrane. ND5 is one of the seven mitochondrial-encoded subunits of Complex I and is essential for its assembly and catalytic activity. Mutations in MT-ND5 are associated with a spectrum of mitochondrial disorders, including Leber hereditary optic neuropathy (LHON), mitochondrial encephalomyopathy with lactic acidosis and stroke-like episodes (MELAS), Leigh syndrome, and other complex I deficiency phenotypes. Somatic mutations in MT-ND5 have also been reported in various cancers, potentially influencing tumor metabolism.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Leber Hereditary Optic Neuropathy (LHON) | Pathogenic variants (e.g., m.13513G>A, m.13094T>C) impair Complex I activity, leading to retinal ganglion cell degeneration and optic nerve atrophy. | ClinVar, OMIM |
| Mitochondrial Encephalomyopathy with Lactic Acidosis and Stroke-like Episodes (MELAS) | Mutations such as m.13513G>A cause Complex I deficiency, resulting in impaired ATP production and neurological symptoms. | ClinVar, OMIM |
| Leigh Syndrome | Biallelic or heteroplasmic mutations (e.g., m.13513G>A, m.13042G>A) disrupt Complex I, leading to subacute necrotizing encephalomyelopathy. | ClinVar, OMIM |
| Complex I Deficiency (Nuclear and Mitochondrial) | Various MT-ND5 mutations reduce Complex I activity, causing multisystem disorders with lactic acidosis, hypotonia, and cardiomyopathy. | OMIM, ClinVar |
| Cancer (somatic mutations) | Somatic mutations in MT-ND5 have been identified in renal, breast, and colorectal tumors; may alter mitochondrial metabolism and apoptosis. | COSMIC |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Heart | High (nTPM ~ 2000) | High mitochondrial content |
| Skeletal Muscle | High (nTPM ~ 1800) | High energy demand |
| Liver | Moderate (nTPM ~ 1000) | Metabolic activity |
| Brain | Moderate (nTPM ~ 900) | Neuronal energy requirement |
| Kidney | Moderate (nTPM ~ 800) | Active transport |
| Lung | Low (nTPM ~ 300) | Lower mitochondrial density |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa (cervical cancer) | High | Cancer cell line with active OXPHOS |
| MCF7 (breast cancer) | Moderate | Hormone-responsive, mitochondrial activity |
| A549 (lung cancer) | Moderate | Adenocarcinoma, mitochondrial function |
| HepG2 (liver cancer) | High | Hepatocyte metabolism |
| SH-SY5Y (neuroblastoma) | Moderate | Neuronal-like, mitochondrial dependence |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| m.13513G>A (p.D393N) | Missense | Rare (0.1-1% in mitochondrial disease cohorts) | Associated with MELAS, LHON, and Leigh syndrome; reduces Complex I activity |
| m.13094T>C (p.V253A) | Missense | Rare | LHON-associated; impairs Complex I assembly |
| m.13042G>A (p.A236T) | Missense | Rare | Leigh syndrome; disrupts proton pumping |
| m.13514A>G (p.D393G) | Missense | Rare | MELAS/LHON overlap; severe Complex I deficiency |
| m.12706T>C (p.F18L) | Missense | Rare | LHON; mild effect on Complex I |
| Somatic mutations (e.g., c.1238A>G) | Missense | Variable in tumors | Found in COSMIC; may alter tumor metabolism |
Mutation functional classification
Loss of Function (LOF)
Most pathogenic MT-ND5 mutations cause partial or complete loss of Complex I activity, leading to reduced ATP production and increased oxidative stress. Examples include m.13513G>A and m.13094T>C.
Gain of Function (GOF)
No clear gain-of-function mutations have been reported; some variants may increase reactive oxygen species (ROS) production, but this is not a classic gain-of-function.
Dominant Negative (DN)
Mitochondrial heteroplasmy can result in a dominant-negative effect if the mutant mtDNA load exceeds a threshold, impairing Complex I assembly and function.
View complete mutation data:
Gene Ontology (GO)
| • NADH dehydrogenase (ubiquinone) activity (GO:0008137) | • acting on NAD(P)H (GO:0016655) |
| • Mitochondrial respiratory chain complex I (GO:0005747) | • Mitochondrial inner membrane (GO:0005743) |
| • Proton transmembrane transport (GO:1902600) | • ATP synthesis coupled electron transport (GO:0042773) |
Pathways
• Oxidative phosphorylation (KEGG: hsa00190)
• Metabolic pathways (KEGG: hsa01100)
• Thermogenesis (KEGG: hsa04714)
• Parkinson disease (KEGG: hsa05012)
• Huntington disease (KEGG: hsa05016)
• Alzheimer disease (KEGG: hsa05010)
Protein Summary
The ND5 protein (UniProt P03915) is a 603-amino acid hydrophobic subunit of mitochondrial Complex I. It is embedded in the inner mitochondrial membrane and contributes to the proton translocation machinery. ND5 is part of the membrane arm of Complex I, where it participates in the conformational changes that drive proton pumping. The protein has 14 transmembrane helices and is essential for the assembly and stability of the holoenzyme. Defects in ND5 lead to impaired electron transfer and proton gradient generation, resulting in mitochondrial dysfunction. The protein is synthesized within mitochondria and requires the mitochondrial translation machinery for its production.
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