LTBP3 Gene - Latent Transforming Growth Factor Beta Binding Protein 3
Comprehensive genomic and functional analysis of LTBP3, a key regulator of TGF-β bioavailability and extracellular matrix assembly.
Gene Information Card
| Symbol | LTBP3 |
|---|---|
| Full Name | Latent transforming growth factor beta binding protein 3 |
| Gene Type | Protein coding |
| Chromosomal Location | 11q13.1 |
| NCBI Gene ID | 4054 ncbi.nlm.nih.gov/gene/4054 |
| Ensembl ID | ENSG00000111145 |
| UniProt ID | Q9NS15 |
| OMIM ID | 602090 |
| HGNC ID | 6716 |
| Aliases | LTBP-3, LTBP3_HUMAN |
Description
LTBP3 encodes latent transforming growth factor beta binding protein 3, a member of the LTBP family. This protein binds to the latent form of TGF-β and targets it to the extracellular matrix, regulating TGF-β activation and bioavailability. LTBP3 is essential for proper skeletal and dental development, as well as for maintaining extracellular matrix integrity. Mutations in LTBP3 are associated with autosomal recessive disorders including dental anomalies and short stature.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Dental anomalies and short stature (DASS) | Loss-of-function mutations in LTBP3 disrupt TGF-β sequestration and activation, impairing craniofacial and skeletal development. | OMIM #601216; PMID: 25913036 |
| Brachyolmia type 3 (with amelogenesis imperfecta) | LTBP3 mutations reduce TGF-β signaling in chondrocytes and odontoblasts, leading to short trunk, short stature, and enamel defects. | OMIM #601216; PMID: 25913036 |
| Geleophysic dysplasia 3 | LTBP3 deficiency alters extracellular matrix composition and TGF-β latency, contributing to acromelic dysplasia. | OMIM #617809; PMID: 27531015 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Heart | 12.5 | Medium |
| Lung | 10.2 | Medium |
| Kidney | 8.9 | Medium |
| Liver | 6.1 | Low |
| Brain | 4.3 | Low |
| Testis | 15.7 | High |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 9.8 | Hepatocellular carcinoma |
| A549 | 7.4 | Lung adenocarcinoma |
| MCF7 | 5.2 | Breast adenocarcinoma |
| HEK 293 | 11.3 | Embryonic kidney |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1240C>T (p.Arg414*) | Nonsense | Rare | Loss of function; premature termination |
| c.1633G>A (p.Gly545Arg) | Missense | Rare | Impaired protein folding and secretion |
| c.2056_2057del (p.Leu686fs) | Frameshift | Rare | Loss of function; truncated protein |
Mutation functional classification
Loss of Function (LOF)
Most LTBP3 disease-associated mutations are loss-of-function, leading to reduced TGF-β binding and extracellular matrix defects.
Gain of Function (GOF)
No gain-of-function mutations reported in LTBP3.
Dominant Negative (DN)
No dominant-negative mutations reported; LTBP3 disorders are autosomal recessive.
View complete mutation data:
Gene Ontology (GO)
| • extracellular region (GO:0005576) | • extracellular space (GO:0005615) |
| • protein binding (GO:0005515) | • collagen fibril organization (GO:0030199) |
| • identical protein binding (GO:0042802) | • transforming growth factor beta binding (GO:0050431) |
| • collagen-containing extracellular matrix (GO:0062023) |
Pathways
• TGF-beta signaling pathway (KEGG hsa04350)
• Extracellular matrix organization (Reactome R-HSA-1474244)
• Regulation of TGF-β activation (Reactome R-HSA-2129379)
Protein Summary
LTBP3 is a 1303-amino-acid extracellular matrix protein that binds latent TGF-β via its latent TGF-β binding domain. It contains multiple EGF-like domains and a hybrid motif that mediates interaction with fibrillin microfibrils. LTBP3 is critical for targeting latent TGF-β to the matrix, where proteolytic release activates TGF-β signaling. Defects in LTBP3 cause skeletal and dental dysplasias due to impaired TGF-β bioavailability.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| LTBP3 Knockout HEK293 Cell Line | EDJ-KQ2270 | Human | 4054 | Details Get a Quote |
| LTBP3 Knockout A-549 Cell Line | EDJ-KQ22610 | Human | 4054 | Details Get a Quote |
| LTBP3 Knockout HCT 116 Cell Line | EDJ-KQ22611 | Human | 4054 | Details Get a Quote |
| LTBP3 Knockout HeLa Cell Line | EDJ-KQ22612 | Human | 4054 | Details Get a Quote |
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