KLRK1 (NKG2D): A Key Activating Receptor in Natural Killer Cell-Mediated Immunity

Comprehensive genomic, expression, and clinical insights into KLRK1, the gene encoding NKG2D, a critical regulator of immune surveillance and antitumor responses.

Gene Information Card

Symbol KLRK1
Full Name killer cell lectin like receptor K1
Gene Type protein coding
Chromosomal Location 12p13.2
NCBI Gene ID 22914 ncbi.nlm.nih.gov/gene/22914
Ensembl ID ENSG00000213809
UniProt ID P26718
OMIM ID 611817
HGNC ID 18762
Aliases NKG2D, CD314, D12S2489E, KLR

Description

KLRK1 encodes NKG2D, a type II transmembrane C-type lectin-like receptor expressed on natural killer (NK) cells, CD8+ T cells, and subsets of γδ T cells. NKG2D functions as an activating receptor that recognizes stress-induced ligands (e.g., MICA, MICB, ULBP family) on tumor cells and infected cells, triggering cytotoxic responses and cytokine production. It plays a critical role in immune surveillance, tumor rejection, and antiviral defense. The gene is located on chromosome 12p13.2 and is part of the NK gene complex. Alternative splicing produces multiple isoforms, and the receptor can be expressed as a membrane-bound or soluble form, with soluble NKG2D potentially modulating immune responses.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (various types) NKG2D ligands are often upregulated on tumor cells; KLRK1 expression on immune cells enables tumor recognition and lysis. Loss of NKG2D function or ligand shedding can lead to immune evasion. Multiple studies; COSMIC and ClinVar document somatic alterations in tumors.
Autoimmune diseases (e.g., rheumatoid arthritis, type 1 diabetes) Altered NKG2D signaling may contribute to autoreactive T cell activation and tissue damage. Association studies; OMIM and PubMed.
Viral infections (e.g., CMV, HIV) NKG2D recognizes virus-induced stress ligands; viral evasion strategies downregulate ligands or NKG2D expression. Experimental evidence; NCBI and UniProt.
Inflammatory bowel disease (IBD) NKG2D+ T cells may drive intestinal inflammation via ligand recognition on stressed epithelial cells. Clinical studies; OMIM.

Expression Profile

Tissue Expression
Tissue nTPM level
Bone Marrow Not available Low expression in normal bone marrow; NK cells are present but KLRK1 expression is not tissue-specific.
Spleen Not available High expression in splenic NK cells and T cells.
Peripheral Blood Not available Expressed on NK cells, CD8+ T cells, and γδ T cells.
Lymph Node Not available Present on immune cells within lymph nodes.
Thymus Not available Expressed on developing T cells and NK cells.
Cell Line Expression
Cell Line nTPM Notes
NK-92 (NK cell line) Not available High expression; used as model for NK cell function.
Jurkat (T cell line) Not available Low/inducible expression; not constitutive.
K562 (erythroleukemia) Not available Negative; used as target for NK cell killing.
Primary NK cells Not available High expression; essential for cytotoxicity.
Primary CD8+ T cells Not available Inducible upon activation; contributes to co-stimulation.
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.433A>G (p.Thr145Ala) Missense Rare (population databases) Potential impact on ligand binding; clinical significance uncertain.
c.562C>T (p.Arg188Trp) Missense Rare May affect receptor dimerization or signaling; not well characterized.
c.IVS1+1G>A Splice site Very rare Predicted to disrupt splicing; likely loss-of-function.
Somatic mutations in tumors Various Low frequency in COSMIC May alter NKG2D function in tumor microenvironment; not fully understood.
Mutation functional classification

Loss of Function (LOF)

Loss-of-function mutations in KLRK1 are rare and may impair NKG2D surface expression or ligand binding, leading to reduced immune surveillance and increased susceptibility to infections or cancer. Examples include splice-site variants and missense mutations affecting conserved residues.

Gain of Function (GOF)

Gain-of-function mutations are not well documented for KLRK1. Overexpression of NKG2D on immune cells is generally beneficial for antitumor immunity, but no activating mutations have been reported.

Dominant Negative (DN)

Dominant-negative effects are not established for KLRK1. However, soluble NKG2D isoforms (resulting from alternative splicing) can act as decoy receptors, potentially inhibiting ligand-induced signaling, which may mimic a dominant-negative effect.

Gene Ontology (GO)

• receptor activity • protein homodimerization activity
• signaling receptor activity • carbohydrate binding
• cell surface receptor signaling pathway • natural killer cell mediated cytotoxicity
• immune response • positive regulation of cytokine production
• cell-cell signaling • defense response to virus

Pathways

NK cell mediated cytotoxicity (KEGG hsa04650)
Natural killer cell signaling (Reactome R-HSA-1236977)
Immunoregulatory interactions between a Lymphoid and a non-Lymphoid cell (Reactome R-HSA-198933)
Antigen processing and presentation (partially)

Protein Summary

NKG2D is a type II transmembrane protein with an extracellular C-type lectin-like domain that forms homodimers. It associates with DAP10 (HCST) adaptor protein via a charged residue in its transmembrane domain, leading to PI3K and GRB2 signaling. NKG2D recognizes stress-induced ligands such as MICA, MICB, and ULBP1-6, which are upregulated on transformed cells and infected cells. Upon ligand binding, NKG2D triggers NK cell cytotoxicity and co-stimulates T cells. The protein is also cleaved from the cell surface by matrix metalloproteinases, producing soluble NKG2D that can neutralize ligands and modulate immune responses. Post-translational modifications include glycosylation and disulfide bond formation.

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KLRK1 Overexpression HEK293 Stable Cell Line EDJ-GQ122 Human 22914 Details Get a Quote
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