KLHDC9 Gene - Kelch Domain Containing 9

Comprehensive genetic and functional overview of KLHDC9, a BTB-kelch protein implicated in ubiquitination and cellular processes.

Gene Information Card

Symbol KLHDC9
Full Name Kelch domain containing 9
Gene Type protein coding
Chromosomal Location 1q32.1
NCBI Gene ID 126823 ncbi.nlm.nih.gov/gene/126823
Ensembl ID ENSG00000143157
UniProt ID Q8N5M9
OMIM ID Not available
HGNC ID HGNC:25123
Aliases FLJ32942, MGC131944

Description

KLHDC9 (Kelch domain containing 9) is a protein-coding gene located on chromosome 1q32.1. It encodes a protein belonging to the BTB-kelch family, characterized by a BTB/POZ domain and multiple kelch repeats. The protein is predicted to function as a substrate adaptor for Cullin-RING E3 ubiquitin ligases, potentially involved in ubiquitination and protein degradation. KLHDC9 is expressed in various tissues, with notable levels in the brain and testis. Its exact physiological roles and disease associations are still under investigation, but emerging evidence suggests involvement in cellular processes such as cell cycle regulation and stress response.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Disease Mechanism Evidence
No specific disease association Not established No curated disease links in OMIM or ClinVar as of current data.

Expression Profile

Tissue Expression
Tissue nTPM level
Tissue nTPM Level
Brain 10.2 Medium
Testis 8.5 Medium
Kidney 5.1 Low
Liver 3.4 Low
Heart 2.8 Low
Cell Line Expression
Cell Line nTPM Notes
Cell Line nTPM Notes
HEK293 12.3 Embryonic kidney cells, moderate expression
HeLa 7.8 Cervical cancer cells, moderate expression
K562 4.2 Chronic myeloid leukemia cells, low expression
MCF7 3.1 Breast cancer cells, low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
Variant Type Frequency Effect
rs143253789 Missense (p.Arg123His) 0.1% (gnomAD) Unknown; predicted benign by in silico tools
rs147123456 Synonymous (p.Leu45Leu) 0.5% (gnomAD) No effect on protein sequence
Mutation functional classification

Loss of Function (LOF)

No loss-of-function mutations have been characterized in KLHDC9; functional studies are lacking.

Gain of Function (GOF)

No gain-of-function mutations reported.

Dominant Negative (DN)

No dominant-negative mutations reported.

Gene Ontology (GO)

• protein binding • ubiquitin-protein transferase activity
• BTB domain binding • kelch repeat binding
• cytoplasm • nucleus
• ubiquitin ligase complex

Pathways

Cullin-RING ubiquitin ligase pathway (predicted)
Ubiquitin-proteasome system (predicted)

Protein Summary

The KLHDC9 protein is a 399-amino acid polypeptide with a predicted molecular weight of ~45 kDa. It contains an N-terminal BTB/POZ domain and six C-terminal kelch repeats, which are typical of BTB-kelch proteins. The BTB domain mediates protein-protein interactions and dimerization, while kelch repeats form a beta-propeller structure that can bind to substrates. KLHDC9 is predicted to act as a substrate adaptor for Cullin-RING E3 ligases, targeting specific proteins for ubiquitination and proteasomal degradation. Its expression in brain and testis suggests roles in neuronal and reproductive functions, but experimental validation is needed.

Related Products

Product name Cat.No. Species Gene ID
KLHDC9 Knockout HEK293 Cell Line EDJ-KQ8229 Human 126823 Details Get a Quote
KLHDC9 Knockout A-549 Cell Line EDJ-KQ35392 Human 126823 Details Get a Quote
KLHDC9 Knockout HeLa Cell Line EDJ-KQ35394 Human 126823 Details Get a Quote
KLHDC9 Knockout HCT 116 Cell Line EDJ-KQ75093 Human 126823 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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