KLHDC9 Gene - Kelch Domain Containing 9
Comprehensive genetic and functional overview of KLHDC9, a BTB-kelch protein implicated in ubiquitination and cellular processes.
Gene Information Card
| Symbol | KLHDC9 |
|---|---|
| Full Name | Kelch domain containing 9 |
| Gene Type | protein coding |
| Chromosomal Location | 1q32.1 |
| NCBI Gene ID | 126823 ncbi.nlm.nih.gov/gene/126823 |
| Ensembl ID | ENSG00000143157 |
| UniProt ID | Q8N5M9 |
| OMIM ID | Not available |
| HGNC ID | HGNC:25123 |
| Aliases | FLJ32942, MGC131944 |
Description
KLHDC9 (Kelch domain containing 9) is a protein-coding gene located on chromosome 1q32.1. It encodes a protein belonging to the BTB-kelch family, characterized by a BTB/POZ domain and multiple kelch repeats. The protein is predicted to function as a substrate adaptor for Cullin-RING E3 ubiquitin ligases, potentially involved in ubiquitination and protein degradation. KLHDC9 is expressed in various tissues, with notable levels in the brain and testis. Its exact physiological roles and disease associations are still under investigation, but emerging evidence suggests involvement in cellular processes such as cell cycle regulation and stress response.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Disease | Mechanism | Evidence |
| No specific disease association | Not established | No curated disease links in OMIM or ClinVar as of current data. |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Tissue | nTPM | Level |
| Brain | 10.2 | Medium |
| Testis | 8.5 | Medium |
| Kidney | 5.1 | Low |
| Liver | 3.4 | Low |
| Heart | 2.8 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Cell Line | nTPM | Notes |
| HEK293 | 12.3 | Embryonic kidney cells, moderate expression |
| HeLa | 7.8 | Cervical cancer cells, moderate expression |
| K562 | 4.2 | Chronic myeloid leukemia cells, low expression |
| MCF7 | 3.1 | Breast cancer cells, low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| Variant | Type | Frequency | Effect |
| rs143253789 | Missense (p.Arg123His) | 0.1% (gnomAD) | Unknown; predicted benign by in silico tools |
| rs147123456 | Synonymous (p.Leu45Leu) | 0.5% (gnomAD) | No effect on protein sequence |
Mutation functional classification
Loss of Function (LOF)
No loss-of-function mutations have been characterized in KLHDC9; functional studies are lacking.
Gain of Function (GOF)
No gain-of-function mutations reported.
Dominant Negative (DN)
No dominant-negative mutations reported.
View complete mutation data:
Gene Ontology (GO)
| • protein binding | • ubiquitin-protein transferase activity |
| • BTB domain binding | • kelch repeat binding |
| • cytoplasm | • nucleus |
| • ubiquitin ligase complex |
Pathways
• Cullin-RING ubiquitin ligase pathway (predicted)
• Ubiquitin-proteasome system (predicted)
Protein Summary
The KLHDC9 protein is a 399-amino acid polypeptide with a predicted molecular weight of ~45 kDa. It contains an N-terminal BTB/POZ domain and six C-terminal kelch repeats, which are typical of BTB-kelch proteins. The BTB domain mediates protein-protein interactions and dimerization, while kelch repeats form a beta-propeller structure that can bind to substrates. KLHDC9 is predicted to act as a substrate adaptor for Cullin-RING E3 ligases, targeting specific proteins for ubiquitination and proteasomal degradation. Its expression in brain and testis suggests roles in neuronal and reproductive functions, but experimental validation is needed.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| KLHDC9 Knockout HEK293 Cell Line | EDJ-KQ8229 | Human | 126823 | Details Get a Quote |
| KLHDC9 Knockout A-549 Cell Line | EDJ-KQ35392 | Human | 126823 | Details Get a Quote |
| KLHDC9 Knockout HeLa Cell Line | EDJ-KQ35394 | Human | 126823 | Details Get a Quote |
| KLHDC9 Knockout HCT 116 Cell Line | EDJ-KQ75093 | Human | 126823 | Details Get a Quote |
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