KLF1: Kruppel-like Factor 1 (Erythroid)
Master regulator of erythropoiesis and hemoglobin switching
Gene Information Card
| Symbol | KLF1 |
|---|---|
| Full Name | Kruppel-like factor 1 (erythroid) |
| Gene Type | Protein coding |
| Chromosomal Location | 19p13.13-p13.12 |
| NCBI Gene ID | 10661 ncbi.nlm.nih.gov/gene/10661 |
| Ensembl ID | ENSG00000105610 |
| UniProt ID | Q13351 |
| OMIM ID | 600599 |
| HGNC ID | 6345 |
| Aliases | EKLF, EKLF1, HBFQTL5 |
Description
KLF1 (Kruppel-like factor 1, also known as EKLF) is a zinc-finger transcription factor essential for erythroid development and differentiation. It directly activates beta-globin gene expression and regulates the switch from fetal (gamma) to adult (beta) hemoglobin. KLF1 also controls expression of many erythroid-specific genes involved in membrane stability, heme synthesis, and cell cycle regulation. Loss-of-function mutations cause congenital dyserythropoietic anemia type IV and the In(Lu) blood group phenotype, while gain-of-function variants are associated with hereditary persistence of fetal hemoglobin (HPFH).
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Congenital dyserythropoietic anemia type IV | Biallelic loss-of-function mutations in KLF1 impair erythroid maturation, leading to ineffective erythropoiesis and anemia. | ClinVar, OMIM #613673 |
| Hereditary persistence of fetal hemoglobin (HPFH) | Gain-of-function or dominant-negative KLF1 variants disrupt hemoglobin switching, maintaining high fetal hemoglobin levels into adulthood. | OMIM #142470, NCBI |
| In(Lu) phenotype (Lutheran blood group) | Heterozygous loss-of-function KLF1 mutations reduce BCAM (Lutheran antigen) expression on red cells. | ClinVar, OMIM #111150 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Bone marrow | 58.2 | High |
| Spleen | 12.1 | Medium |
| Whole blood | 8.5 | Medium |
| Liver | 1.3 | Low |
| Lung | 0.4 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| K562 (erythroleukemia) | 45.6 | High expression; used in hemoglobin switching studies |
| HEL (erythroleukemia) | 38.2 | High expression |
| TF-1 (erythroblast) | 29.8 | High expression |
| HeLa | 0.2 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.973G>A (p.Glu325Lys) | Missense | Rare | Loss of DNA-binding; causes CDA type IV |
| c.304C>T (p.Arg102Trp) | Missense | Rare | Dominant-negative; associated with HPFH |
| c.519_521del (p.Phe174del) | Deletion | Rare | Loss of function; In(Lu) phenotype |
| c.892G>A (p.Gly298Arg) | Missense | Rare | Reduced transactivation; CDA type IV |
Mutation functional classification
Loss of Function (LOF)
Biallelic loss-of-function mutations (e.g., p.Glu325Lys) impair erythroid maturation, causing congenital dyserythropoietic anemia type IV. Heterozygous loss-of-function leads to In(Lu) phenotype.
Gain of Function (GOF)
Gain-of-function variants (e.g., p.Arg102Trp) enhance gamma-globin expression, resulting in hereditary persistence of fetal hemoglobin (HPFH).
Dominant Negative (DN)
Dominant-negative mutations (e.g., p.Arg102Trp) interfere with wild-type KLF1 activity, disrupting hemoglobin switching and causing HPFH.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Erythropoiesis (Reactome: R-HSA-1266738)
• Hemoglobin switching (Reactome: R-HSA-983231)
• Transcriptional regulation by KLF1 (Reactome: R-HSA-983232)
Protein Summary
KLF1 (EKLF) is a 362-amino acid zinc-finger transcription factor that binds to CACCC boxes in the beta-globin locus control region and promoters. It is essential for definitive erythropoiesis, activating beta-globin and repressing gamma-globin expression. The protein contains three C-terminal C2H2 zinc fingers that mediate DNA binding and an N-terminal transactivation domain. Post-translational modifications include acetylation and phosphorylation, which modulate its activity. KLF1 also interacts with chromatin remodeling complexes (e.g., SWI/SNF) to regulate erythroid gene expression.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| KLF10 Knockout HEK293 Cell Line | EDJ-KQ2323 | Human | 7071 | Details Get a Quote |
| KLF11 Knockout HEK293 Cell Line | EDJ-KQ6244 | Human | 8462 | Details Get a Quote |
| KLF1 Knockout HEK293 Cell Line | EDJ-KQ7122 | Human | 10661 | Details Get a Quote |
| KLF15 Knockout HEK293 Cell Line | EDJ-KQ8961 | Human | 28999 | Details Get a Quote |
| KLF17 Knockout HEK293 Cell Line | EDJ-KQ9151 | Human | 128209 | Details Get a Quote |
| KLF12 Knockout HEK293 Cell Line | EDJ-KQ13947 | Human | 11278 | Details Get a Quote |
| KLF14 Knockout HEK293 Cell Line | EDJ-KQ13948 | Human | 136259 | Details Get a Quote |
| KLF18 Knockout HEK293 Cell Line | EDJ-KQ13949 | Human | 105378952 | Details Get a Quote |
| KLF11 Knockout A-549 Cell Line | EDJ-KQ30101 | Human | 8462 | Details Get a Quote |
| KLF11 Knockout HCT 116 Cell Line | EDJ-KQ30102 | Human | 8462 | Details Get a Quote |
| KLF11 Knockout HeLa Cell Line | EDJ-KQ30103 | Human | 8462 | Details Get a Quote |
| KLF10 Knockout A-549 Cell Line | EDJ-KQ22714 | Human | 7071 | Details Get a Quote |
| KLF10 Knockout HCT 116 Cell Line | EDJ-KQ22715 | Human | 7071 | Details Get a Quote |
| KLF10 Knockout HeLa Cell Line | EDJ-KQ22716 | Human | 7071 | Details Get a Quote |
| KLF12 Knockout A-549 Cell Line | EDJ-KQ43862 | Human | 11278 | Details Get a Quote |
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