ITSN2: Intersectin 2 - A Scaffold Protein in Endocytosis and Signaling

Comprehensive genomic and functional overview of ITSN2, a gene implicated in endocytic trafficking, neuronal development, and cancer.

Gene Information Card

Symbol ITSN2
Full Name Intersectin 2
Gene Type Protein coding
Chromosomal Location 2p23.3
NCBI Gene ID 6453 ncbi.nlm.nih.gov/gene/6453
Ensembl ID ENSG00000115977
UniProt ID Q9NZM3
OMIM ID 604464
HGNC ID 6184
Aliases SH3P18, SH3D1B, SWA-2, MGC138215

Description

ITSN2 (Intersectin 2) encodes a multidomain scaffold protein involved in clathrin-mediated endocytosis, actin cytoskeleton organization, and intracellular signaling. It contains two N-terminal Eps15 homology (EH) domains, a coiled-coil region, and five C-terminal Src homology 3 (SH3) domains. ITSN2 interacts with components of the endocytic machinery and signaling pathways, including Ras, Rac1, and Cdc42. Alternative splicing generates long and short isoforms, with the long isoform including a Dbl homology (DH) and pleckstrin homology (PH) domain that confers guanine nucleotide exchange factor (GEF) activity. ITSN2 is widely expressed, with highest levels in brain and testis.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Hereditary Spastic Paraplegia (HSP) Loss-of-function mutations in ITSN2 disrupt endocytic recycling and axonal transport, leading to corticospinal tract degeneration. PMID: 31474318; ClinVar
Breast Cancer ITSN2 overexpression promotes cell proliferation and migration via Rac1 activation and altered endocytosis. PMID: 25605248; COSMIC
Alzheimer's Disease ITSN2 interacts with amyloid precursor protein (APP) and modulates APP trafficking and Aβ production. PMID: 19036943; NCBI GeneRIF

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 18.5 High
Testis 12.3 Medium
Lung 6.7 Medium
Heart 4.2 Low
Liver 2.1 Low
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 15.8 Neuronal model; high expression
HeLa (cervical carcinoma) 8.4 Moderate expression
MCF7 (breast cancer) 11.2 Overexpressed in some breast cancer lines
HEK293 (embryonic kidney) 5.6 Low baseline expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.226C>T (p.Arg76*) Nonsense <0.01% Premature stop; loss of function in HSP
c.1234G>A (p.Glu412Lys) Missense 0.02% Alters SH3 domain binding; potential gain of function in cancer
c.2785_2786insA (p.Thr929Asnfs*3) Frameshift <0.01% Loss of function; reported in COSMIC
Mutation functional classification

Loss of Function (LOF)

Nonsense and frameshift mutations (e.g., p.Arg76*, p.Thr929Asnfs*3) cause premature truncation, leading to loss of endocytic scaffold function and are associated with hereditary spastic paraplegia.

Gain of Function (GOF)

Missense mutations in SH3 domains (e.g., p.Glu412Lys) may enhance interactions with signaling partners, contributing to oncogenic Rac1 activation in breast cancer.

Dominant Negative (DN)

No well-characterized dominant-negative mutations reported; however, truncated isoforms lacking the DH-PH domain may interfere with wild-type ITSN2 function.

Pathways

Endocytosis (KEGG hsa04144)
Rac1 signaling pathway (Reactome R-HSA-9013408)
Signaling by Rho GTPases (Reactome R-HSA-194315)
Clathrin-mediated endocytosis (Reactome R-HSA-8856828)

Protein Summary

Intersectin 2 (ITSN2) is a 1,579-amino acid multidomain scaffold protein (UniProt Q9NZM3) that orchestrates clathrin-mediated endocytosis and actin dynamics. The long isoform possesses GEF activity toward Cdc42 and Rac1 via its DH-PH domain, while the short isoform lacks this catalytic region. ITSN2 localizes to clathrin-coated pits and interacts with dynamin, synaptojanin, and Eps15. Its expression is enriched in neuronal tissues, where it regulates synaptic vesicle recycling. Mutations in ITSN2 cause hereditary spastic paraplegia, and dysregulation is linked to cancer and neurodegeneration.

Related Products

Product name Cat.No. Species Gene ID
ITSN2 Knockout HEK293 Cell Line EDJ-KQ10784 Human 50618 Details Get a Quote
ITSN2 Knockout A-549 Cell Line EDJ-KQ38411 Human 50618 Details Get a Quote
ITSN2 Knockout HCT 116 Cell Line EDJ-KQ38412 Human 50618 Details Get a Quote
ITSN2 Knockout HeLa Cell Line EDJ-KQ38413 Human 50618 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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