HMGA2: High Mobility Group AT-Hook 2

Architectural Transcription Factor in Growth, Development, and Oncogenesis

Gene Information Card

Symbol HMGA2
Full Name High Mobility Group AT-Hook 2
Gene Type Protein coding
Chromosomal Location 12q14.3
NCBI Gene ID 8091 ncbi.nlm.nih.gov/gene/8091
Ensembl ID ENSG00000149948
UniProt ID P52926
OMIM ID 600698
HGNC ID 5009
Aliases HMGIC, LIPO, BABL, HMGI-C, STQTL9

Description

HMGA2 encodes a member of the high mobility group (HMG) protein family. The protein contains AT-hook DNA-binding domains and functions as an architectural transcription factor, regulating chromatin structure and gene expression. It plays critical roles in growth, development, and cell proliferation. Chromosomal rearrangements involving HMGA2 are frequently associated with benign mesenchymal tumors such as lipomas, uterine leiomyomas, and pituitary adenomas. Overexpression or truncation of HMGA2 is implicated in various cancers and growth disorders.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Lipoma HMGA2 rearrangements (e.g., 12q14.3 breaks) lead to aberrant expression or truncated protein, promoting adipocyte proliferation. OMIM #600698; COSMIC; ClinVar
Pituitary Adenoma HMGA2 overexpression or rearrangement drives tumorigenesis in somatotroph cells. OMIM #600698; NCBI Gene
Uterine Leiomyoma HMGA2 rearrangements (e.g., t(12;14)) result in dysregulation, contributing to smooth muscle tumor formation. OMIM #600698; ClinVar
Breast Cancer HMGA2 overexpression correlates with poor prognosis and metastasis. COSMIC; NCBI Gene
Lung Cancer HMGA2 amplification or overexpression promotes epithelial-mesenchymal transition and invasion. COSMIC; NCBI Gene

Expression Profile

Tissue Expression
Tissue nTPM level
Adipose tissue 5.2 Medium
Uterus 3.8 Low
Pituitary gland 2.1 Low
Lung 1.5 Low
Breast 1.2 Low
Cell Line Expression
Cell Line nTPM Notes
HeLa 4.5 Cervical cancer cell line
A549 3.2 Lung adenocarcinoma cell line
MCF7 2.8 Breast cancer cell line
HT-29 1.9 Colorectal adenocarcinoma cell line
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1-? rearrangements Structural variant Common in lipomas Disrupts 3' UTR, leading to overexpression or truncated protein
p.Thr20Ala Missense Rare Unknown functional effect
Amplification Copy number gain Frequent in lung and breast cancers Increased HMGA2 expression
Mutation functional classification

Loss of Function (LOF)

Not commonly reported; HMGA2 is primarily oncogenic via gain-of-function or overexpression.

Gain of Function (GOF)

Rearrangements leading to overexpression or truncated protein lacking the C-terminal regulatory domain enhance transcriptional activity and promote proliferation.

Dominant Negative (DN)

Truncated HMGA2 isoforms may interfere with wild-type protein function, though dominant-negative effects are not well established.

Pathways

PI3K-Akt signaling pathway
MAPK signaling pathway
TGF-beta signaling pathway
Transcriptional misregulation in cancer

Protein Summary

HMGA2 is a small nuclear protein (109 amino acids) with three AT-hook DNA-binding motifs that bind to the minor groove of AT-rich DNA sequences. It does not have intrinsic transcriptional activity but alters chromatin architecture to facilitate or repress transcription of target genes. The protein is highly expressed during embryonic development and in many cancers, but is low or absent in most normal adult tissues. Post-translational modifications include phosphorylation and acetylation, which modulate its DNA-binding affinity and stability.

Related Products

Product name Cat.No. Species Gene ID
HMGA2 Knockout HEK293 Cell Line EDJ-KQ924 Human 8091 Details Get a Quote
HMGA2 Knockout HCT 116 Cell Line EDJ-KQ18562 Human 8091 Details Get a Quote
HMGA2 Knockout A-549 Cell Line EDJ-KQ19891 Human 8091 Details Get a Quote
HMGA2 Knockout HeLa Cell Line EDJ-KQ19893 Human 8091 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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