HCRT (Hypocretin Neuropeptide Precursor)

Key regulator of wakefulness and appetite; mutations cause narcolepsy type 1.

Gene Information Card

Symbol HCRT
Full Name Hypocretin Neuropeptide Precursor
Gene Type protein-coding
Chromosomal Location 17q21.2
NCBI Gene ID 3060 ncbi.nlm.nih.gov/gene/3060
Ensembl ID ENSG00000161610
UniProt ID O43612
OMIM ID 602358
HGNC ID 4847
Aliases OX, PPOX, orexin

Description

The HCRT gene encodes the preprohypocretin precursor, which is cleaved into two neuropeptides: hypocretin-1 (orexin-A) and hypocretin-2 (orexin-B). These peptides bind to G-protein-coupled receptors (HCRTR1 and HCRTR2) to regulate wakefulness, appetite, and energy homeostasis. Loss of HCRT-producing neurons or mutations in HCRT cause narcolepsy type 1, characterized by excessive daytime sleepiness and cataplexy.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Narcolepsy type 1 Loss of hypocretin-producing neurons in the hypothalamus; rare HCRT mutations lead to deficient hypocretin signaling. OMIM #161400; ClinVar; multiple case reports
Narcolepsy type 2 No hypocretin deficiency; HCRT mutations not typically implicated. OMIM #605841; differential diagnosis
Obesity Hypocretin regulates appetite; altered signaling may contribute to metabolic disorders. GWAS and animal studies (NCBI)

Expression Profile

Tissue Expression
Tissue nTPM level
Hypothalamus 12.5 High
Brain (other regions) 1.2 Low
Testis 0.3 Not detected
Adipose tissue 0.1 Not detected
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 0.8 Low expression
SK-N-SH (neuroblastoma) 0.5 Low expression
HEK293 (embryonic kidney) 0.0 Not detected
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.130C>T (p.Gln44*) Nonsense Rare Loss of function; truncates preprohypocretin, leading to narcolepsy type 1
c.214G>A (p.Gly72Arg) Missense Rare Loss of function; disrupts peptide processing
c.317_318del (p.Leu106Profs*13) Frameshift Rare Loss of function; premature stop codon
Mutation functional classification

Loss of Function (LOF)

Nonsense, frameshift, and missense mutations that reduce or abolish hypocretin production or function; cause narcolepsy type 1.

Gain of Function (GOF)

Not reported for HCRT.

Dominant Negative (DN)

Not reported for HCRT.

Pathways

Hypocretin receptor signaling (HCRTR1/HCRTR2)
Neuroactive ligand-receptor interaction (KEGG:04080)
Orexin receptor pathway (Reactome: R-HSA-388841)

Protein Summary

The HCRT gene encodes preprohypocretin, a 131-amino-acid precursor that is proteolytically cleaved to produce two neuropeptides: hypocretin-1 (orexin-A, 33 aa) and hypocretin-2 (orexin-B, 28 aa). These peptides are produced exclusively in the lateral hypothalamus and bind to two G-protein-coupled receptors (HCRTR1 and HCRTR2) to promote wakefulness, stimulate appetite, and regulate energy balance. Deficiency of hypocretin is the primary cause of narcolepsy type 1.

Related Products

Product name Cat.No. Species Gene ID
HCRTR1 Knockout HEK293 Cell Line EDJ-KQ4851 Human 3061 Details Get a Quote
HCRTR2 Knockout HEK293 Cell Line EDJ-KQ4852 Human 3062 Details Get a Quote
HCRT Knockout HEK293 Cell Line EDJ-KQ4858 Human 3060 Details Get a Quote
HCRT Knockout HeLa Cell Line EDJ-KQ53505 Human 3060 Details Get a Quote
HCRTR1 Knockout HeLa Cell Line EDJ-KQ53506 Human 3061 Details Get a Quote
HCRTR2 Knockout HeLa Cell Line EDJ-KQ53507 Human 3062 Details Get a Quote
HCRT Knockout A-549 Cell Line EDJ-KQ61974 Human 3060 Details Get a Quote
HCRTR1 Knockout A-549 Cell Line EDJ-KQ61975 Human 3061 Details Get a Quote
HCRTR2 Knockout A-549 Cell Line EDJ-KQ61976 Human 3062 Details Get a Quote
HCRT Knockout HCT 116 Cell Line EDJ-KQ70456 Human 3060 Details Get a Quote
HCRTR1 Knockout HCT 116 Cell Line EDJ-KQ70457 Human 3061 Details Get a Quote
HCRTR2 Knockout HCT 116 Cell Line EDJ-KQ70458 Human 3062 Details Get a Quote
Displaying Records 1 To 12 Of 12 Records
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