HCRT (Hypocretin Neuropeptide Precursor)
Key regulator of wakefulness and appetite; mutations cause narcolepsy type 1.
Gene Information Card
| Symbol | HCRT |
|---|---|
| Full Name | Hypocretin Neuropeptide Precursor |
| Gene Type | protein-coding |
| Chromosomal Location | 17q21.2 |
| NCBI Gene ID | 3060 ncbi.nlm.nih.gov/gene/3060 |
| Ensembl ID | ENSG00000161610 |
| UniProt ID | O43612 |
| OMIM ID | 602358 |
| HGNC ID | 4847 |
| Aliases | OX, PPOX, orexin |
Description
The HCRT gene encodes the preprohypocretin precursor, which is cleaved into two neuropeptides: hypocretin-1 (orexin-A) and hypocretin-2 (orexin-B). These peptides bind to G-protein-coupled receptors (HCRTR1 and HCRTR2) to regulate wakefulness, appetite, and energy homeostasis. Loss of HCRT-producing neurons or mutations in HCRT cause narcolepsy type 1, characterized by excessive daytime sleepiness and cataplexy.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Narcolepsy type 1 | Loss of hypocretin-producing neurons in the hypothalamus; rare HCRT mutations lead to deficient hypocretin signaling. | OMIM #161400; ClinVar; multiple case reports |
| Narcolepsy type 2 | No hypocretin deficiency; HCRT mutations not typically implicated. | OMIM #605841; differential diagnosis |
| Obesity | Hypocretin regulates appetite; altered signaling may contribute to metabolic disorders. | GWAS and animal studies (NCBI) |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Hypothalamus | 12.5 | High |
| Brain (other regions) | 1.2 | Low |
| Testis | 0.3 | Not detected |
| Adipose tissue | 0.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 0.8 | Low expression |
| SK-N-SH (neuroblastoma) | 0.5 | Low expression |
| HEK293 (embryonic kidney) | 0.0 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.130C>T (p.Gln44*) | Nonsense | Rare | Loss of function; truncates preprohypocretin, leading to narcolepsy type 1 |
| c.214G>A (p.Gly72Arg) | Missense | Rare | Loss of function; disrupts peptide processing |
| c.317_318del (p.Leu106Profs*13) | Frameshift | Rare | Loss of function; premature stop codon |
Mutation functional classification
Loss of Function (LOF)
Nonsense, frameshift, and missense mutations that reduce or abolish hypocretin production or function; cause narcolepsy type 1.
Gain of Function (GOF)
Not reported for HCRT.
Dominant Negative (DN)
Not reported for HCRT.
View complete mutation data:
Gene Ontology (GO)
| • hormone activity (GO:0005179) | • neuropeptide signaling pathway (GO:0007218) |
| • adult feeding behavior (GO:0008343) | • sleep (GO:0030431) |
| • eating behavior (GO:0042755) |
Pathways
• Hypocretin receptor signaling (HCRTR1/HCRTR2)
• Neuroactive ligand-receptor interaction (KEGG:04080)
• Orexin receptor pathway (Reactome: R-HSA-388841)
Protein Summary
The HCRT gene encodes preprohypocretin, a 131-amino-acid precursor that is proteolytically cleaved to produce two neuropeptides: hypocretin-1 (orexin-A, 33 aa) and hypocretin-2 (orexin-B, 28 aa). These peptides are produced exclusively in the lateral hypothalamus and bind to two G-protein-coupled receptors (HCRTR1 and HCRTR2) to promote wakefulness, stimulate appetite, and regulate energy balance. Deficiency of hypocretin is the primary cause of narcolepsy type 1.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| HCRTR1 Knockout HEK293 Cell Line | EDJ-KQ4851 | Human | 3061 | Details Get a Quote |
| HCRTR2 Knockout HEK293 Cell Line | EDJ-KQ4852 | Human | 3062 | Details Get a Quote |
| HCRT Knockout HEK293 Cell Line | EDJ-KQ4858 | Human | 3060 | Details Get a Quote |
| HCRT Knockout HeLa Cell Line | EDJ-KQ53505 | Human | 3060 | Details Get a Quote |
| HCRTR1 Knockout HeLa Cell Line | EDJ-KQ53506 | Human | 3061 | Details Get a Quote |
| HCRTR2 Knockout HeLa Cell Line | EDJ-KQ53507 | Human | 3062 | Details Get a Quote |
| HCRT Knockout A-549 Cell Line | EDJ-KQ61974 | Human | 3060 | Details Get a Quote |
| HCRTR1 Knockout A-549 Cell Line | EDJ-KQ61975 | Human | 3061 | Details Get a Quote |
| HCRTR2 Knockout A-549 Cell Line | EDJ-KQ61976 | Human | 3062 | Details Get a Quote |
| HCRT Knockout HCT 116 Cell Line | EDJ-KQ70456 | Human | 3060 | Details Get a Quote |
| HCRTR1 Knockout HCT 116 Cell Line | EDJ-KQ70457 | Human | 3061 | Details Get a Quote |
| HCRTR2 Knockout HCT 116 Cell Line | EDJ-KQ70458 | Human | 3062 | Details Get a Quote |
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