GRIN2D
Glutamate Ionotropic Receptor NMDA Type Subunit 2D
Gene Information Card
| Symbol | GRIN2D |
|---|---|
| Full Name | Glutamate Ionotropic Receptor NMDA Type Subunit 2D |
| Gene Type | protein-coding |
| Chromosomal Location | 19q13.33 |
| NCBI Gene ID | 2906 ncbi.nlm.nih.gov/gene/2906 |
| Ensembl ID | ENSG00000105464 |
| UniProt ID | O15399 |
| OMIM ID | 602717 |
| HGNC ID | 4588 |
| Aliases | GluN2D, NMDAR2D, NR2D |
Description
GRIN2D encodes the GluN2D subunit of the N-methyl-D-aspartate (NMDA) receptor, an ionotropic glutamate receptor that mediates excitatory neurotransmission. The GluN2D subunit is predominantly expressed in the brain, particularly in the thalamus, hippocampus, and brainstem, and plays a critical role in synaptic plasticity, neuronal development, and excitotoxicity. Mutations in GRIN2D are associated with neurodevelopmental disorders including epilepsy, intellectual disability, and autism spectrum disorder.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Epileptic encephalopathy, early infantile | Gain-of-function or loss-of-function mutations in GRIN2D alter NMDA receptor activity, leading to neuronal hyperexcitability or impaired synaptic transmission. | ClinVar, OMIM |
| Intellectual disability | Missense variants in GRIN2D disrupt receptor function and synaptic signaling, contributing to cognitive impairment. | ClinVar, OMIM |
| Autism spectrum disorder | Rare GRIN2D variants may affect NMDA receptor-mediated synaptic plasticity and social behavior. | ClinVar, NCBI |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 7.8 | Medium |
| Cerebellum | 5.2 | Low |
| Thalamus | 12.1 | High |
| Hippocampus | 9.4 | Medium |
| Spinal cord | 3.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 6.5 | Moderate expression |
| U-87 MG (glioblastoma) | 2.3 | Low expression |
| HEK293 (embryonic kidney) | 0.8 | Very low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1999G>A (p.Val667Ile) | Missense | Rare | Gain-of-function; increased NMDA receptor current |
| c.2453C>T (p.Pro818Leu) | Missense | Rare | Loss-of-function; reduced receptor activity |
| c.1699C>T (p.Arg567Trp) | Missense | Rare | Dominant-negative effect; impaired channel gating |
Mutation functional classification
Loss of Function (LOF)
Mutations that reduce NMDA receptor current or surface expression, e.g., p.Pro818Leu.
Gain of Function (GOF)
Mutations that increase NMDA receptor current or open probability, e.g., p.Val667Ile.
Dominant Negative (DN)
Mutations that interfere with wild-type subunit assembly or function, e.g., p.Arg567Trp.
View complete mutation data:
Gene Ontology (GO)
| • NMDA glutamate receptor activity (GO:0004972) | • extracellular ligand-gated ion channel activity (GO:0005230) |
| • plasma membrane (GO:0005886) | • ion transmembrane transport (GO:0034220) |
| • chemical synaptic transmission (GO:0007268) | • excitatory postsynaptic potential (GO:0060079) |
Pathways
• NMDA receptor signaling (Reactome: R-HSA-438066)
• Unblocking of NMDA receptor
• glutamate binding and activation (Reactome: R-HSA-438064)
• Neurotransmitter receptor binding and downstream transmission in the postsynaptic cell (Reactome: R-HSA-112314)
Protein Summary
The GluN2D protein (UniProt O15399) is a 1,336-amino acid subunit of the NMDA receptor. It contains an extracellular N-terminal domain, a ligand-binding domain, three transmembrane helices (M1, M3, M4), a re-entrant pore loop (M2), and an intracellular C-terminal domain. GluN2D assembles with GluN1 subunits to form functional NMDA receptors that are permeable to calcium ions. The C-terminal domain interacts with scaffolding proteins such as PSD-95 and mediates receptor trafficking and signaling.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| GRIN2D Knockout HEK293 Cell Line | EDJ-KQ1577 | Human | 2906 | Details Get a Quote |
| GRIN2D Knockout A-549 Cell Line | EDJ-KQ19907 | Human | 2906 | Details Get a Quote |
| GRIN2D Knockout HCT 116 Cell Line | EDJ-KQ21263 | Human | 2906 | Details Get a Quote |
| GRIN2D Knockout AGS Cell Line | EDJ-KZ271 | Human | 2906 | Details Get a Quote |
| GRIN2D Knockout HeLa Cell Line | EDJ-KQ53433 | Human | 2906 | Details Get a Quote |
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