GRIN2D

Glutamate Ionotropic Receptor NMDA Type Subunit 2D

Gene Information Card

Symbol GRIN2D
Full Name Glutamate Ionotropic Receptor NMDA Type Subunit 2D
Gene Type protein-coding
Chromosomal Location 19q13.33
NCBI Gene ID 2906 ncbi.nlm.nih.gov/gene/2906
Ensembl ID ENSG00000105464
UniProt ID O15399
OMIM ID 602717
HGNC ID 4588
Aliases GluN2D, NMDAR2D, NR2D

Description

GRIN2D encodes the GluN2D subunit of the N-methyl-D-aspartate (NMDA) receptor, an ionotropic glutamate receptor that mediates excitatory neurotransmission. The GluN2D subunit is predominantly expressed in the brain, particularly in the thalamus, hippocampus, and brainstem, and plays a critical role in synaptic plasticity, neuronal development, and excitotoxicity. Mutations in GRIN2D are associated with neurodevelopmental disorders including epilepsy, intellectual disability, and autism spectrum disorder.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Epileptic encephalopathy, early infantile Gain-of-function or loss-of-function mutations in GRIN2D alter NMDA receptor activity, leading to neuronal hyperexcitability or impaired synaptic transmission. ClinVar, OMIM
Intellectual disability Missense variants in GRIN2D disrupt receptor function and synaptic signaling, contributing to cognitive impairment. ClinVar, OMIM
Autism spectrum disorder Rare GRIN2D variants may affect NMDA receptor-mediated synaptic plasticity and social behavior. ClinVar, NCBI

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 7.8 Medium
Cerebellum 5.2 Low
Thalamus 12.1 High
Hippocampus 9.4 Medium
Spinal cord 3.1 Low
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 6.5 Moderate expression
U-87 MG (glioblastoma) 2.3 Low expression
HEK293 (embryonic kidney) 0.8 Very low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1999G>A (p.Val667Ile) Missense Rare Gain-of-function; increased NMDA receptor current
c.2453C>T (p.Pro818Leu) Missense Rare Loss-of-function; reduced receptor activity
c.1699C>T (p.Arg567Trp) Missense Rare Dominant-negative effect; impaired channel gating
Mutation functional classification

Loss of Function (LOF)

Mutations that reduce NMDA receptor current or surface expression, e.g., p.Pro818Leu.

Gain of Function (GOF)

Mutations that increase NMDA receptor current or open probability, e.g., p.Val667Ile.

Dominant Negative (DN)

Mutations that interfere with wild-type subunit assembly or function, e.g., p.Arg567Trp.

Pathways

NMDA receptor signaling (Reactome: R-HSA-438066)
Unblocking of NMDA receptor
glutamate binding and activation (Reactome: R-HSA-438064)
Neurotransmitter receptor binding and downstream transmission in the postsynaptic cell (Reactome: R-HSA-112314)

Protein Summary

The GluN2D protein (UniProt O15399) is a 1,336-amino acid subunit of the NMDA receptor. It contains an extracellular N-terminal domain, a ligand-binding domain, three transmembrane helices (M1, M3, M4), a re-entrant pore loop (M2), and an intracellular C-terminal domain. GluN2D assembles with GluN1 subunits to form functional NMDA receptors that are permeable to calcium ions. The C-terminal domain interacts with scaffolding proteins such as PSD-95 and mediates receptor trafficking and signaling.

Related Products

Product name Cat.No. Species Gene ID
GRIN2D Knockout HEK293 Cell Line EDJ-KQ1577 Human 2906 Details Get a Quote
GRIN2D Knockout A-549 Cell Line EDJ-KQ19907 Human 2906 Details Get a Quote
GRIN2D Knockout HCT 116 Cell Line EDJ-KQ21263 Human 2906 Details Get a Quote
GRIN2D Knockout AGS Cell Line EDJ-KZ271 Human 2906 Details Get a Quote
GRIN2D Knockout HeLa Cell Line EDJ-KQ53433 Human 2906 Details Get a Quote
Displaying Records 1 To 5 Of 5 Records
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