GAMT Gene
Guanidinoacetate N-Methyltransferase
Gene Information Card
| Symbol | GAMT |
|---|---|
| Full Name | Guanidinoacetate N-Methyltransferase |
| Gene Type | Protein coding |
| Chromosomal Location | 19p13.3 |
| NCBI Gene ID | 2593 ncbi.nlm.nih.gov/gene/2593 |
| Ensembl ID | ENSG00000130005 |
| UniProt ID | Q14353 |
| OMIM ID | 601240 |
| HGNC ID | 4136 |
| Aliases | PIG2, CCDS2, MGC104233 |
Description
The GAMT gene encodes guanidinoacetate N-methyltransferase, an enzyme that catalyzes the final step of creatine biosynthesis, transferring a methyl group from S-adenosylmethionine to guanidinoacetate to form creatine. Creatine is essential for energy storage and transfer in tissues with high energy demands, such as muscle and brain. Loss-of-function mutations in GAMT cause cerebral creatine deficiency syndrome 2 (CCDS2), an autosomal recessive disorder characterized by intellectual disability, epilepsy, movement disorders, and autistic behavior. Diagnosis is based on elevated guanidinoacetate in urine and plasma, and reduced brain creatine on MRS. Treatment includes creatine supplementation, ornithine, and arginine restriction.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Cerebral creatine deficiency syndrome 2 (CCDS2) | Loss-of-function mutations in GAMT impair creatine biosynthesis, leading to reduced brain creatine and accumulation of guanidinoacetate, which is neurotoxic. | OMIM #612736; ClinVar; multiple case reports |
| Autism spectrum disorder | GAMT deficiency can present with autistic features; creatine deficiency affects neuronal energy metabolism and synaptic function. | PMID: 12555929; ClinVar |
| Epilepsy | Low brain creatine and guanidinoacetate accumulation lower seizure threshold. | PMID: 12555929; OMIM |
| Intellectual disability | Impaired energy metabolism in developing brain leads to cognitive deficits. | OMIM #612736; multiple studies |
| Movement disorder (extrapyramidal) | Guanidinoacetate accumulation and creatine depletion affect basal ganglia function. | PMID: 12555929; OMIM |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 38.2 | High |
| Kidney | 27.1 | High |
| Brain | 15.4 | Medium |
| Testis | 12.8 | Medium |
| Heart | 10.3 | Medium |
| Skeletal muscle | 8.9 | Medium |
| Pancreas | 6.2 | Low |
| Lung | 4.1 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 42.5 | Liver carcinoma cell line; high expression |
| HEK293 | 18.3 | Embryonic kidney; moderate expression |
| SH-SY5Y | 12.1 | Neuroblastoma; moderate expression |
| A549 | 5.6 | Lung carcinoma; low expression |
| K562 | 3.2 | Leukemia; low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.59G>A (p.Trp20*) | Nonsense | Common in European populations | Loss of function; premature stop codon |
| c.327G>A (p.Met109Ile) | Missense | Rare | Loss of function; reduced enzyme activity |
| c.491G>A (p.Arg164Gln) | Missense | Rare | Loss of function; reduced enzyme activity |
| c.59G>T (p.Trp20Leu) | Missense | Rare | Loss of function; reduced enzyme activity |
| c.1A>G (p.Met1?) | Start loss | Rare | Loss of function; no translation |
Mutation functional classification
Loss of Function (LOF)
Most GAMT mutations are loss-of-function, leading to complete or partial loss of enzyme activity, causing creatine deficiency and guanidinoacetate accumulation.
Gain of Function (GOF)
No gain-of-function mutations reported for GAMT.
Dominant Negative (DN)
No dominant-negative mutations reported; GAMT deficiency is autosomal recessive.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Creatine metabolism (Reactome: R-HSA-71288)
• Glycine
• serine
• and threonine metabolism (KEGG: hsa00260)
• Arginine and proline metabolism (KEGG: hsa00330)
Protein Summary
Guanidinoacetate N-methyltransferase (GAMT) is a 236-amino acid cytosolic enzyme that catalyzes the conversion of guanidinoacetate to creatine using S-adenosylmethionine as the methyl donor. The protein is a homodimer, with each subunit containing a methyltransferase domain. GAMT is highly expressed in liver and kidney, with moderate expression in brain, testis, heart, and skeletal muscle. Mutations in GAMT lead to cerebral creatine deficiency syndrome 2, characterized by intellectual disability, epilepsy, movement disorders, and autistic behavior. The enzyme is essential for maintaining cellular energy homeostasis, particularly in tissues with high and fluctuating energy demands.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| GAMT Knockout HEK293 Cell Line | EDJ-KQ4676 | Human | 2593 | Details Get a Quote |
| GAMT Knockout A-549 Cell Line | EDJ-KQ27370 | Human | 2593 | Details Get a Quote |
| GAMT Knockout HCT 116 Cell Line | EDJ-KQ27371 | Human | 2593 | Details Get a Quote |
| GAMT Knockout HeLa Cell Line | EDJ-KQ27372 | Human | 2593 | Details Get a Quote |
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