GAMT Gene

Guanidinoacetate N-Methyltransferase

Gene Information Card

Symbol GAMT
Full Name Guanidinoacetate N-Methyltransferase
Gene Type Protein coding
Chromosomal Location 19p13.3
NCBI Gene ID 2593 ncbi.nlm.nih.gov/gene/2593
Ensembl ID ENSG00000130005
UniProt ID Q14353
OMIM ID 601240
HGNC ID 4136
Aliases PIG2, CCDS2, MGC104233

Description

The GAMT gene encodes guanidinoacetate N-methyltransferase, an enzyme that catalyzes the final step of creatine biosynthesis, transferring a methyl group from S-adenosylmethionine to guanidinoacetate to form creatine. Creatine is essential for energy storage and transfer in tissues with high energy demands, such as muscle and brain. Loss-of-function mutations in GAMT cause cerebral creatine deficiency syndrome 2 (CCDS2), an autosomal recessive disorder characterized by intellectual disability, epilepsy, movement disorders, and autistic behavior. Diagnosis is based on elevated guanidinoacetate in urine and plasma, and reduced brain creatine on MRS. Treatment includes creatine supplementation, ornithine, and arginine restriction.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cerebral creatine deficiency syndrome 2 (CCDS2) Loss-of-function mutations in GAMT impair creatine biosynthesis, leading to reduced brain creatine and accumulation of guanidinoacetate, which is neurotoxic. OMIM #612736; ClinVar; multiple case reports
Autism spectrum disorder GAMT deficiency can present with autistic features; creatine deficiency affects neuronal energy metabolism and synaptic function. PMID: 12555929; ClinVar
Epilepsy Low brain creatine and guanidinoacetate accumulation lower seizure threshold. PMID: 12555929; OMIM
Intellectual disability Impaired energy metabolism in developing brain leads to cognitive deficits. OMIM #612736; multiple studies
Movement disorder (extrapyramidal) Guanidinoacetate accumulation and creatine depletion affect basal ganglia function. PMID: 12555929; OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 38.2 High
Kidney 27.1 High
Brain 15.4 Medium
Testis 12.8 Medium
Heart 10.3 Medium
Skeletal muscle 8.9 Medium
Pancreas 6.2 Low
Lung 4.1 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 42.5 Liver carcinoma cell line; high expression
HEK293 18.3 Embryonic kidney; moderate expression
SH-SY5Y 12.1 Neuroblastoma; moderate expression
A549 5.6 Lung carcinoma; low expression
K562 3.2 Leukemia; low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.59G>A (p.Trp20*) Nonsense Common in European populations Loss of function; premature stop codon
c.327G>A (p.Met109Ile) Missense Rare Loss of function; reduced enzyme activity
c.491G>A (p.Arg164Gln) Missense Rare Loss of function; reduced enzyme activity
c.59G>T (p.Trp20Leu) Missense Rare Loss of function; reduced enzyme activity
c.1A>G (p.Met1?) Start loss Rare Loss of function; no translation
Mutation functional classification

Loss of Function (LOF)

Most GAMT mutations are loss-of-function, leading to complete or partial loss of enzyme activity, causing creatine deficiency and guanidinoacetate accumulation.

Gain of Function (GOF)

No gain-of-function mutations reported for GAMT.

Dominant Negative (DN)

No dominant-negative mutations reported; GAMT deficiency is autosomal recessive.

Pathways

Creatine metabolism (Reactome: R-HSA-71288)
Glycine
serine
and threonine metabolism (KEGG: hsa00260)
Arginine and proline metabolism (KEGG: hsa00330)

Protein Summary

Guanidinoacetate N-methyltransferase (GAMT) is a 236-amino acid cytosolic enzyme that catalyzes the conversion of guanidinoacetate to creatine using S-adenosylmethionine as the methyl donor. The protein is a homodimer, with each subunit containing a methyltransferase domain. GAMT is highly expressed in liver and kidney, with moderate expression in brain, testis, heart, and skeletal muscle. Mutations in GAMT lead to cerebral creatine deficiency syndrome 2, characterized by intellectual disability, epilepsy, movement disorders, and autistic behavior. The enzyme is essential for maintaining cellular energy homeostasis, particularly in tissues with high and fluctuating energy demands.

Related Products

Product name Cat.No. Species Gene ID
GAMT Knockout HEK293 Cell Line EDJ-KQ4676 Human 2593 Details Get a Quote
GAMT Knockout A-549 Cell Line EDJ-KQ27370 Human 2593 Details Get a Quote
GAMT Knockout HCT 116 Cell Line EDJ-KQ27371 Human 2593 Details Get a Quote
GAMT Knockout HeLa Cell Line EDJ-KQ27372 Human 2593 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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