GABRA1
Gamma-Aminobutyric Acid Type A Receptor Subunit Alpha1
Gene Information Card
| Symbol | GABRA1 |
|---|---|
| Full Name | gamma-aminobutyric acid type A receptor subunit alpha1 |
| Gene Type | protein-coding |
| Chromosomal Location | 5q34 |
| NCBI Gene ID | 2554 ncbi.nlm.nih.gov/gene/2554 |
| Ensembl ID | ENSG00000022355 |
| UniProt ID | P14867 |
| OMIM ID | 137160 |
| HGNC ID | 4075 |
| Aliases | EJM, EJM5, GABRA1 |
Description
GABRA1 encodes the alpha1 subunit of the gamma-aminobutyric acid type A (GABA-A) receptor, a pentameric ligand-gated chloride channel that mediates fast inhibitory neurotransmission in the central nervous system. The alpha1 subunit is the most abundant alpha subunit in the brain and is essential for benzodiazepine sensitivity and receptor clustering at synapses. Mutations in GABRA1 are associated with several epilepsy syndromes, including juvenile myoclonic epilepsy and childhood absence epilepsy.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Juvenile Myoclonic Epilepsy (EJM) | Missense mutations reduce GABA-A receptor function, leading to neuronal hyperexcitability | OMIM #254770; multiple case reports |
| Childhood Absence Epilepsy | Loss-of-function variants impair inhibitory neurotransmission in thalamocortical circuits | ClinVar; functional studies |
| Epilepsy, Idiopathic Generalized, Susceptibility to | Heterozygous variants alter channel gating or surface expression | OMIM #611942 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain (cerebral cortex) | 32.5 | High |
| Brain (cerebellum) | 28.1 | High |
| Brain (hippocampus) | 30.2 | High |
| Brain (amygdala) | 27.8 | High |
| Spinal cord | 15.4 | Medium |
| Testis | 1.2 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 18.5 | Neuronal model |
| U-87 MG (glioblastoma) | 2.3 | Low expression |
| HEK293 (embryonic kidney) | 0.1 | Not endogenously expressed |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.295A>G (p.Lys99Glu) | Missense | Rare | Reduced GABA-evoked current amplitude |
| c.764C>T (p.Ala255Val) | Missense | Rare | Impaired receptor trafficking to cell surface |
| c.880G>A (p.Glu294Lys) | Missense | Rare | Decreased channel open probability |
| c.1291C>T (p.Arg431*) | Nonsense | Very rare | Premature truncation, loss of function |
Mutation functional classification
Loss of Function (LOF)
Most epilepsy-associated mutations reduce GABA-A receptor function by decreasing channel conductance, altering gating, or impairing surface expression.
Gain of Function (GOF)
Not reported for GABRA1; gain-of-function mutations are not associated with disease.
Dominant Negative (DN)
Some missense mutations (e.g., p.Ala255Val) exert dominant-negative effects by co-assembling with wild-type subunits and impairing receptor function.
View complete mutation data:
Gene Ontology (GO)
| • GABA-gated chloride ion channel activity (GO:0022851) | • extracellular ligand-gated ion channel activity (GO:0005230) |
| • chloride channel complex (GO:0034707) | • postsynaptic membrane (GO:0045211) |
| • inhibitory synapse (GO:0060076) | • chemical synaptic transmission (GO:0007268) |
Pathways
• GABAergic synapse (KEGG: hsa04727)
• Neuroactive ligand-receptor interaction (KEGG: hsa04080)
• Transmission across Chemical Synapses (Reactome: R-HSA-112315)
Protein Summary
The GABRA1 protein (UniProt P14867) is a 456-amino-acid transmembrane subunit that forms part of the GABA-A receptor pentamer. It contains an extracellular N-terminal domain with a signal peptide, four transmembrane domains (M1-M4), and a large intracellular loop between M3 and M4 that mediates phosphorylation and interactions with scaffolding proteins. The alpha1 subunit confers high affinity for GABA and benzodiazepine sensitivity when co-assembled with beta2/3 and gamma2 subunits. Post-translational modifications include N-glycosylation and palmitoylation.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| GABRA1 Knockout HEK293 Cell Line | EDJ-KQ3507 | Human | 2554 | Details Get a Quote |
| GABRA1 Knockout HeLa Cell Line | EDJ-KQ53286 | Human | 2554 | Details Get a Quote |
| GABRA1 Knockout A-549 Cell Line | EDJ-KQ61768 | Human | 2554 | Details Get a Quote |
| GABRA1 Knockout HCT 116 Cell Line | EDJ-KQ70250 | Human | 2554 | Details Get a Quote |
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