GABRA1

Gamma-Aminobutyric Acid Type A Receptor Subunit Alpha1

Gene Information Card

Symbol GABRA1
Full Name gamma-aminobutyric acid type A receptor subunit alpha1
Gene Type protein-coding
Chromosomal Location 5q34
NCBI Gene ID 2554 ncbi.nlm.nih.gov/gene/2554
Ensembl ID ENSG00000022355
UniProt ID P14867
OMIM ID 137160
HGNC ID 4075
Aliases EJM, EJM5, GABRA1

Description

GABRA1 encodes the alpha1 subunit of the gamma-aminobutyric acid type A (GABA-A) receptor, a pentameric ligand-gated chloride channel that mediates fast inhibitory neurotransmission in the central nervous system. The alpha1 subunit is the most abundant alpha subunit in the brain and is essential for benzodiazepine sensitivity and receptor clustering at synapses. Mutations in GABRA1 are associated with several epilepsy syndromes, including juvenile myoclonic epilepsy and childhood absence epilepsy.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Juvenile Myoclonic Epilepsy (EJM) Missense mutations reduce GABA-A receptor function, leading to neuronal hyperexcitability OMIM #254770; multiple case reports
Childhood Absence Epilepsy Loss-of-function variants impair inhibitory neurotransmission in thalamocortical circuits ClinVar; functional studies
Epilepsy, Idiopathic Generalized, Susceptibility to Heterozygous variants alter channel gating or surface expression OMIM #611942

Expression Profile

Tissue Expression
Tissue nTPM level
Brain (cerebral cortex) 32.5 High
Brain (cerebellum) 28.1 High
Brain (hippocampus) 30.2 High
Brain (amygdala) 27.8 High
Spinal cord 15.4 Medium
Testis 1.2 Low
Cell Line Expression
Cell Line nTPM Notes
SH-SY5Y (neuroblastoma) 18.5 Neuronal model
U-87 MG (glioblastoma) 2.3 Low expression
HEK293 (embryonic kidney) 0.1 Not endogenously expressed
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.295A>G (p.Lys99Glu) Missense Rare Reduced GABA-evoked current amplitude
c.764C>T (p.Ala255Val) Missense Rare Impaired receptor trafficking to cell surface
c.880G>A (p.Glu294Lys) Missense Rare Decreased channel open probability
c.1291C>T (p.Arg431*) Nonsense Very rare Premature truncation, loss of function
Mutation functional classification

Loss of Function (LOF)

Most epilepsy-associated mutations reduce GABA-A receptor function by decreasing channel conductance, altering gating, or impairing surface expression.

Gain of Function (GOF)

Not reported for GABRA1; gain-of-function mutations are not associated with disease.

Dominant Negative (DN)

Some missense mutations (e.g., p.Ala255Val) exert dominant-negative effects by co-assembling with wild-type subunits and impairing receptor function.

Pathways

GABAergic synapse (KEGG: hsa04727)
Neuroactive ligand-receptor interaction (KEGG: hsa04080)
Transmission across Chemical Synapses (Reactome: R-HSA-112315)

Protein Summary

The GABRA1 protein (UniProt P14867) is a 456-amino-acid transmembrane subunit that forms part of the GABA-A receptor pentamer. It contains an extracellular N-terminal domain with a signal peptide, four transmembrane domains (M1-M4), and a large intracellular loop between M3 and M4 that mediates phosphorylation and interactions with scaffolding proteins. The alpha1 subunit confers high affinity for GABA and benzodiazepine sensitivity when co-assembled with beta2/3 and gamma2 subunits. Post-translational modifications include N-glycosylation and palmitoylation.

Related Products

Product name Cat.No. Species Gene ID
GABRA1 Knockout HEK293 Cell Line EDJ-KQ3507 Human 2554 Details Get a Quote
GABRA1 Knockout HeLa Cell Line EDJ-KQ53286 Human 2554 Details Get a Quote
GABRA1 Knockout A-549 Cell Line EDJ-KQ61768 Human 2554 Details Get a Quote
GABRA1 Knockout HCT 116 Cell Line EDJ-KQ70250 Human 2554 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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