FLG (Filaggrin) Gene

Key player in skin barrier function and atopic disease susceptibility

Gene Information Card

Symbol FLG
Full Name Filaggrin
Gene Type Protein coding
Chromosomal Location 1q21.3
NCBI Gene ID 2312 ncbi.nlm.nih.gov/gene/2312
Ensembl ID ENSG00000143631
UniProt ID P20930
OMIM ID 135940
HGNC ID 3748
Aliases ATOD2, filaggrin, profilaggrin

Description

The FLG gene encodes filaggrin, a filament-associated protein that aggregates keratin intermediate filaments in the stratum corneum of the epidermis. It is synthesized as a large precursor, profilaggrin, which is proteolytically processed into multiple filaggrin repeats. Filaggrin is essential for skin barrier formation and hydration; its breakdown products contribute to natural moisturizing factor. Loss-of-function mutations in FLG are a major risk factor for atopic dermatitis, ichthyosis vulgaris, and associated allergic conditions.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Atopic dermatitis Loss-of-function mutations impair skin barrier, increasing allergen and irritant penetration OMIM #603165; multiple GWAS and cohort studies
Ichthyosis vulgaris Null mutations cause reduced filaggrin, leading to dry, scaly skin OMIM #146700; Smith et al., Nat Genet 2006
Asthma (associated) Skin barrier defects facilitate allergen sensitization, contributing to airway inflammation Meta-analyses in J Allergy Clin Immunol
Food allergy Impaired epidermal barrier allows early allergen exposure, promoting sensitization Epidemiological studies; Brough et al., JACI 2014

Expression Profile

Tissue Expression
Tissue nTPM level
Skin 207.2 High
Esophagus 1.2 Low
Oral mucosa 0.8 Low
Vagina 0.5 Low
Other tissues <0.1 Not detected
Cell Line Expression
Cell Line nTPM Notes
Keratinocytes (primary) 150.0 High expression; differentiation-dependent
HaCaT 120.0 Immortalized keratinocyte line
NHEK 140.0 Normal human epidermal keratinocytes
A431 2.0 Low expression (epidermoid carcinoma)
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
R501X Nonsense ~2-4% in Europeans Loss of function; premature stop codon in repeat 1
2282del4 Frameshift deletion ~2-4% in Europeans Loss of function; frameshift in repeat 1
S3247X Nonsense Rare Loss of function; premature stop codon
R2447X Nonsense Rare Loss of function; premature stop codon
Mutation functional classification

Loss of Function (LOF)

Most FLG mutations are loss-of-function (nonsense, frameshift) leading to truncated or absent filaggrin, impairing skin barrier integrity.

Gain of Function (GOF)

No gain-of-function mutations reported for FLG.

Dominant Negative (DN)

Not applicable; FLG mutations act via haploinsufficiency or complete loss.

Pathways

Keratinization (Reactome: R-HSA-6805567)
Formation of the cornified envelope (Reactome: R-HSA-6809371)
Developmental biology (Reactome: R-HSA-1266738)

Protein Summary

Filaggrin is a 406 kDa precursor protein (profilaggrin) consisting of multiple filaggrin repeats flanked by N- and C-terminal domains. After dephosphorylation and proteolysis, mature filaggrin binds keratin intermediate filaments, promoting their aggregation into macrofibrils. In the upper stratum corneum, filaggrin is further degraded into amino acids and derivatives that constitute natural moisturizing factor, crucial for skin hydration and pH regulation. Loss of filaggrin leads to dry, scaly skin and increased permeability to allergens.

Related Products

Product name Cat.No. Species Gene ID
FLG2 Knockout HEK293 Cell Line EDJ-KQ12741 Human 388698 Details Get a Quote
FLG Knockout HEK293 Cell Line EDJ-KQ50281 Human 2312 Details Get a Quote
FLG Knockout HeLa Cell Line EDJ-KQ53248 Human 2312 Details Get a Quote
FLG2 Knockout HeLa Cell Line EDJ-KQ60046 Human 388698 Details Get a Quote
FLG Knockout A-549 Cell Line EDJ-KQ61730 Human 2312 Details Get a Quote
FLG2 Knockout A-549 Cell Line EDJ-KQ68509 Human 388698 Details Get a Quote
FLG Knockout HCT 116 Cell Line EDJ-KQ70216 Human 2312 Details Get a Quote
FLG2 Knockout HCT 116 Cell Line EDJ-KQ76884 Human 388698 Details Get a Quote
Displaying Records 1 To 8 Of 8 Records
Contact Us
*
*
*
*
How did you hear about us: