FLG (Filaggrin) Gene
Key player in skin barrier function and atopic disease susceptibility
Gene Information Card
| Symbol | FLG |
|---|---|
| Full Name | Filaggrin |
| Gene Type | Protein coding |
| Chromosomal Location | 1q21.3 |
| NCBI Gene ID | 2312 ncbi.nlm.nih.gov/gene/2312 |
| Ensembl ID | ENSG00000143631 |
| UniProt ID | P20930 |
| OMIM ID | 135940 |
| HGNC ID | 3748 |
| Aliases | ATOD2, filaggrin, profilaggrin |
Description
The FLG gene encodes filaggrin, a filament-associated protein that aggregates keratin intermediate filaments in the stratum corneum of the epidermis. It is synthesized as a large precursor, profilaggrin, which is proteolytically processed into multiple filaggrin repeats. Filaggrin is essential for skin barrier formation and hydration; its breakdown products contribute to natural moisturizing factor. Loss-of-function mutations in FLG are a major risk factor for atopic dermatitis, ichthyosis vulgaris, and associated allergic conditions.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Atopic dermatitis | Loss-of-function mutations impair skin barrier, increasing allergen and irritant penetration | OMIM #603165; multiple GWAS and cohort studies |
| Ichthyosis vulgaris | Null mutations cause reduced filaggrin, leading to dry, scaly skin | OMIM #146700; Smith et al., Nat Genet 2006 |
| Asthma (associated) | Skin barrier defects facilitate allergen sensitization, contributing to airway inflammation | Meta-analyses in J Allergy Clin Immunol |
| Food allergy | Impaired epidermal barrier allows early allergen exposure, promoting sensitization | Epidemiological studies; Brough et al., JACI 2014 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Skin | 207.2 | High |
| Esophagus | 1.2 | Low |
| Oral mucosa | 0.8 | Low |
| Vagina | 0.5 | Low |
| Other tissues | <0.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Keratinocytes (primary) | 150.0 | High expression; differentiation-dependent |
| HaCaT | 120.0 | Immortalized keratinocyte line |
| NHEK | 140.0 | Normal human epidermal keratinocytes |
| A431 | 2.0 | Low expression (epidermoid carcinoma) |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| R501X | Nonsense | ~2-4% in Europeans | Loss of function; premature stop codon in repeat 1 |
| 2282del4 | Frameshift deletion | ~2-4% in Europeans | Loss of function; frameshift in repeat 1 |
| S3247X | Nonsense | Rare | Loss of function; premature stop codon |
| R2447X | Nonsense | Rare | Loss of function; premature stop codon |
Mutation functional classification
Loss of Function (LOF)
Most FLG mutations are loss-of-function (nonsense, frameshift) leading to truncated or absent filaggrin, impairing skin barrier integrity.
Gain of Function (GOF)
No gain-of-function mutations reported for FLG.
Dominant Negative (DN)
Not applicable; FLG mutations act via haploinsufficiency or complete loss.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Keratinization (Reactome: R-HSA-6805567)
• Formation of the cornified envelope (Reactome: R-HSA-6809371)
• Developmental biology (Reactome: R-HSA-1266738)
Protein Summary
Filaggrin is a 406 kDa precursor protein (profilaggrin) consisting of multiple filaggrin repeats flanked by N- and C-terminal domains. After dephosphorylation and proteolysis, mature filaggrin binds keratin intermediate filaments, promoting their aggregation into macrofibrils. In the upper stratum corneum, filaggrin is further degraded into amino acids and derivatives that constitute natural moisturizing factor, crucial for skin hydration and pH regulation. Loss of filaggrin leads to dry, scaly skin and increased permeability to allergens.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| FLG2 Knockout HEK293 Cell Line | EDJ-KQ12741 | Human | 388698 | Details Get a Quote |
| FLG Knockout HEK293 Cell Line | EDJ-KQ50281 | Human | 2312 | Details Get a Quote |
| FLG Knockout HeLa Cell Line | EDJ-KQ53248 | Human | 2312 | Details Get a Quote |
| FLG2 Knockout HeLa Cell Line | EDJ-KQ60046 | Human | 388698 | Details Get a Quote |
| FLG Knockout A-549 Cell Line | EDJ-KQ61730 | Human | 2312 | Details Get a Quote |
| FLG2 Knockout A-549 Cell Line | EDJ-KQ68509 | Human | 388698 | Details Get a Quote |
| FLG Knockout HCT 116 Cell Line | EDJ-KQ70216 | Human | 2312 | Details Get a Quote |
| FLG2 Knockout HCT 116 Cell Line | EDJ-KQ76884 | Human | 388698 | Details Get a Quote |
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