FHL3: Four and a Half LIM Domains 3

A key regulator of muscle development, cytoskeletal dynamics, and transcriptional control

Gene Information Card

Symbol FHL3
Full Name Four and a Half LIM Domains 3
Gene Type Protein coding
Chromosomal Location 1p34.3
NCBI Gene ID 2275 ncbi.nlm.nih.gov/gene/2275
Ensembl ID ENSG00000116786
UniProt ID Q13643
OMIM ID 602790
HGNC ID 3704
Aliases SLIM2, FHL-3, DRAL

Description

FHL3 (Four and a Half LIM Domains 3) encodes a member of the four-and-a-half-LIM-only protein family. The protein contains four and a half LIM domains, which are zinc-binding motifs involved in protein-protein interactions. FHL3 is predominantly expressed in skeletal and cardiac muscle and functions as a transcriptional co-regulator, modulating myogenic differentiation and cytoskeletal organization. It interacts with transcription factors such as MyoD and MEF2, and with structural proteins like integrins and actin, influencing cell adhesion, migration, and muscle fiber integrity.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Hypertrophic cardiomyopathy Altered FHL3 expression disrupts sarcomere organization and calcium handling; potential modifier gene ClinVar; PMID: 21715563
Skeletal muscle atrophy Downregulation of FHL3 in muscle wasting conditions impairs myogenic differentiation and promotes proteolysis PMID: 19056991
Rhabdomyosarcoma FHL3 overexpression in alveolar rhabdomyosarcoma; promotes tumor cell migration and invasion via integrin signaling COSMIC; PMID: 23358650
Colorectal cancer FHL3 silencing via promoter methylation correlates with metastasis and poor prognosis PMID: 24667604

Expression Profile

Tissue Expression
Tissue nTPM level
Skeletal muscle 112.3 High
Heart 78.6 High
Smooth muscle 12.4 Medium
Lung 3.2 Low
Liver 1.1 Not detected
Cell Line Expression
Cell Line nTPM Notes
RD (rhabdomyosarcoma) 45.2 High expression; relevant to muscle cancer models
C2C12 (mouse myoblast) 38.7 High; used in myogenesis studies
H9c2 (rat cardiomyocyte) 29.5 Moderate; cardiac differentiation model
HeLa 2.1 Low; non-muscle control
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.358C>T (p.Arg120Cys) Missense <0.01% (gnomAD) Alters LIM domain 2; reduced binding to integrin β1; potential loss of function
c.487G>A (p.Gly163Arg) Missense <0.01% (gnomAD) Located in LIM domain 3; impaired interaction with MyoD; may affect myogenesis
c.1A>G (p.Met1Val) Start loss <0.001% (gnomAD) Loss of translation initiation; predicted loss of function
c.625_626insA (p.Leu209Hisfs*12) Frameshift <0.001% (COSMIC) Premature truncation; loss of C-terminal LIM domains; observed in colorectal cancer
Mutation functional classification

Loss of Function (LOF)

Missense mutations in LIM domains (e.g., p.Arg120Cys, p.Gly163Arg) reduce protein-protein interactions with integrins and transcription factors, impairing cytoskeletal anchoring and myogenic gene activation. Start-loss and frameshift mutations lead to absent or truncated protein.

Gain of Function (GOF)

No confirmed gain-of-function mutations reported in FHL3. Overexpression in rhabdomyosarcoma may act as a tumor promoter but is not due to activating mutations.

Dominant Negative (DN)

Not established for FHL3. Heterozygous missense variants could theoretically interfere with wild-type protein complexes, but no dominant-negative mechanism has been experimentally validated.

Pathways

Integrin signaling pathway (Reactome: R-HSA-354192)
Myogenesis (Reactome: R-HSA-525793)
MEF2D-mediated transcription (Reactome: R-HSA-9617629)
p130Cas linkage to MAPK signaling for integrins (Reactome: R-HSA-372708)

Protein Summary

FHL3 is a 279-amino-acid protein (UniProt Q13643) containing four complete LIM domains and one N-terminal half LIM domain. Each LIM domain coordinates two zinc ions, forming a double zinc-finger structure that mediates specific protein interactions. FHL3 shuttles between the cytoplasm and nucleus, acting as an adaptor that links structural proteins (e.g., integrins, actin) to transcriptional regulators (e.g., MyoD, MEF2). In muscle, it promotes myoblast differentiation and sarcomere assembly. In cancer, FHL3 can either suppress or promote tumor progression depending on context: loss contributes to metastasis in colorectal cancer, while overexpression enhances invasion in rhabdomyosarcoma.

Related Products

Product name Cat.No. Species Gene ID
FHL3 Knockout HEK293 Cell Line EDJ-KQ13484 Human 2275 Details Get a Quote
FHL3 Knockout A-549 Cell Line EDJ-KQ43081 Human 2275 Details Get a Quote
FHL3 Knockout HeLa Cell Line EDJ-KQ43082 Human 2275 Details Get a Quote
FHL3 Knockout HCT 116 Cell Line EDJ-KQ26292 Human 2275 Details Get a Quote
Displaying Records 1 To 4 Of 4 Records
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