FHL3: Four and a Half LIM Domains 3
A key regulator of muscle development, cytoskeletal dynamics, and transcriptional control
Gene Information Card
| Symbol | FHL3 |
|---|---|
| Full Name | Four and a Half LIM Domains 3 |
| Gene Type | Protein coding |
| Chromosomal Location | 1p34.3 |
| NCBI Gene ID | 2275 ncbi.nlm.nih.gov/gene/2275 |
| Ensembl ID | ENSG00000116786 |
| UniProt ID | Q13643 |
| OMIM ID | 602790 |
| HGNC ID | 3704 |
| Aliases | SLIM2, FHL-3, DRAL |
Description
FHL3 (Four and a Half LIM Domains 3) encodes a member of the four-and-a-half-LIM-only protein family. The protein contains four and a half LIM domains, which are zinc-binding motifs involved in protein-protein interactions. FHL3 is predominantly expressed in skeletal and cardiac muscle and functions as a transcriptional co-regulator, modulating myogenic differentiation and cytoskeletal organization. It interacts with transcription factors such as MyoD and MEF2, and with structural proteins like integrins and actin, influencing cell adhesion, migration, and muscle fiber integrity.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Hypertrophic cardiomyopathy | Altered FHL3 expression disrupts sarcomere organization and calcium handling; potential modifier gene | ClinVar; PMID: 21715563 |
| Skeletal muscle atrophy | Downregulation of FHL3 in muscle wasting conditions impairs myogenic differentiation and promotes proteolysis | PMID: 19056991 |
| Rhabdomyosarcoma | FHL3 overexpression in alveolar rhabdomyosarcoma; promotes tumor cell migration and invasion via integrin signaling | COSMIC; PMID: 23358650 |
| Colorectal cancer | FHL3 silencing via promoter methylation correlates with metastasis and poor prognosis | PMID: 24667604 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Skeletal muscle | 112.3 | High |
| Heart | 78.6 | High |
| Smooth muscle | 12.4 | Medium |
| Lung | 3.2 | Low |
| Liver | 1.1 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| RD (rhabdomyosarcoma) | 45.2 | High expression; relevant to muscle cancer models |
| C2C12 (mouse myoblast) | 38.7 | High; used in myogenesis studies |
| H9c2 (rat cardiomyocyte) | 29.5 | Moderate; cardiac differentiation model |
| HeLa | 2.1 | Low; non-muscle control |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.358C>T (p.Arg120Cys) | Missense | <0.01% (gnomAD) | Alters LIM domain 2; reduced binding to integrin β1; potential loss of function |
| c.487G>A (p.Gly163Arg) | Missense | <0.01% (gnomAD) | Located in LIM domain 3; impaired interaction with MyoD; may affect myogenesis |
| c.1A>G (p.Met1Val) | Start loss | <0.001% (gnomAD) | Loss of translation initiation; predicted loss of function |
| c.625_626insA (p.Leu209Hisfs*12) | Frameshift | <0.001% (COSMIC) | Premature truncation; loss of C-terminal LIM domains; observed in colorectal cancer |
Mutation functional classification
Loss of Function (LOF)
Missense mutations in LIM domains (e.g., p.Arg120Cys, p.Gly163Arg) reduce protein-protein interactions with integrins and transcription factors, impairing cytoskeletal anchoring and myogenic gene activation. Start-loss and frameshift mutations lead to absent or truncated protein.
Gain of Function (GOF)
No confirmed gain-of-function mutations reported in FHL3. Overexpression in rhabdomyosarcoma may act as a tumor promoter but is not due to activating mutations.
Dominant Negative (DN)
Not established for FHL3. Heterozygous missense variants could theoretically interfere with wild-type protein complexes, but no dominant-negative mechanism has been experimentally validated.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Integrin signaling pathway (Reactome: R-HSA-354192)
• Myogenesis (Reactome: R-HSA-525793)
• MEF2D-mediated transcription (Reactome: R-HSA-9617629)
• p130Cas linkage to MAPK signaling for integrins (Reactome: R-HSA-372708)
Protein Summary
FHL3 is a 279-amino-acid protein (UniProt Q13643) containing four complete LIM domains and one N-terminal half LIM domain. Each LIM domain coordinates two zinc ions, forming a double zinc-finger structure that mediates specific protein interactions. FHL3 shuttles between the cytoplasm and nucleus, acting as an adaptor that links structural proteins (e.g., integrins, actin) to transcriptional regulators (e.g., MyoD, MEF2). In muscle, it promotes myoblast differentiation and sarcomere assembly. In cancer, FHL3 can either suppress or promote tumor progression depending on context: loss contributes to metastasis in colorectal cancer, while overexpression enhances invasion in rhabdomyosarcoma.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| FHL3 Knockout HEK293 Cell Line | EDJ-KQ13484 | Human | 2275 | Details Get a Quote |
| FHL3 Knockout A-549 Cell Line | EDJ-KQ43081 | Human | 2275 | Details Get a Quote |
| FHL3 Knockout HeLa Cell Line | EDJ-KQ43082 | Human | 2275 | Details Get a Quote |
| FHL3 Knockout HCT 116 Cell Line | EDJ-KQ26292 | Human | 2275 | Details Get a Quote |
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