FH Gene (Fumarate Hydratase): Function, Mutations, and Associated Diseases
A comprehensive biomedical overview of the FH gene, including its genomic context, protein function, expression patterns, and clinical significance in hereditary leiomyomatosis and renal cell cancer (HLRCC).
Gene Information Card
| Symbol | FH |
|---|---|
| Full Name | Fumarate hydratase |
| Gene Type | Protein coding |
| Chromosomal Location | 1q43 |
| NCBI Gene ID | 2271 ncbi.nlm.nih.gov/gene/2271 |
| Ensembl ID | ENSG00000091483 |
| UniProt ID | P07954 |
| OMIM ID | 136850 |
| HGNC ID | 3700 |
| Aliases | HLRCC, MCL, MCUL1, fumarase |
Description
The FH gene encodes fumarate hydratase (also known as fumarase), an enzyme that catalyzes the reversible hydration of fumarate to L-malate in the tricarboxylic acid (TCA) cycle. This mitochondrial enzyme plays a critical role in cellular energy metabolism. Germline mutations in FH are associated with hereditary leiomyomatosis and renal cell cancer (HLRCC), a syndrome characterized by cutaneous and uterine leiomyomas and an aggressive form of renal cell carcinoma. Additionally, biallelic mutations cause fumarase deficiency, a severe neurological disorder. FH acts as a tumor suppressor, and loss of function leads to accumulation of fumarate, which stabilizes hypoxia-inducible factors (HIF) and promotes tumorigenesis.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Hereditary leiomyomatosis and renal cell cancer (HLRCC) | Loss-of-function mutations in FH lead to accumulation of fumarate, which inhibits prolyl hydroxylases, stabilizing HIF-1α and promoting angiogenesis and tumor growth. | OMIM #150800; ClinVar; multiple studies |
| Fumarase deficiency | Biallelic mutations in FH result in severe deficiency of fumarase activity, causing mitochondrial dysfunction and neurological impairment. | OMIM #606812; ClinVar |
| Renal cell carcinoma (papillary type II) | FH mutations predispose to aggressive papillary type II renal cell carcinoma, often with early metastasis. | COSMIC; ClinVar; literature |
| Cutaneous leiomyomas | Heterozygous germline mutations cause benign smooth muscle tumors of the skin. | OMIM #150800; ClinVar |
| Uterine leiomyomas (fibroids) | FH mutations are associated with multiple and early-onset uterine fibroids. | OMIM #150800; ClinVar |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Kidney | High | High expression in renal tubules |
| Liver | High | High expression in hepatocytes |
| Heart | High | High expression in cardiac muscle |
| Skeletal muscle | High | High expression in skeletal muscle |
| Brain | Moderate | Moderate expression in neurons |
| Skin | Low | Low expression in skin |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK 293 | High | Embryonic kidney cells show high FH expression |
| HepG2 | High | Liver cancer cell line with high FH expression |
| A549 | Moderate | Lung carcinoma cell line with moderate FH expression |
| MCF7 | Moderate | Breast cancer cell line with moderate FH expression |
| K562 | Low | Chronic myelogenous leukemia cell line with low FH expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1431_1432dupAA (p.Lys478Ilefs*?) | Frameshift | Rare | Loss of function; associated with HLRCC |
| c.1057C>T (p.Arg353Ter) | Nonsense | Rare | Loss of function; associated with HLRCC |
| c.1396A>G (p.Met466Val) | Missense | Rare | Loss of function; associated with HLRCC |
| c.1522C>T (p.Arg508Cys) | Missense | Rare | Loss of function; associated with HLRCC |
| c.698G>A (p.Arg233His) | Missense | Rare | Loss of function; associated with fumarase deficiency |
Mutation functional classification
Loss of Function (LOF)
Most FH mutations are loss-of-function, leading to reduced or absent fumarase activity. This causes accumulation of fumarate, which acts as an oncometabolite by inhibiting HIF prolyl hydroxylases, leading to HIF-1α stabilization and pseudohypoxic signaling.
Gain of Function (GOF)
No gain-of-function mutations have been reported for FH. The gene functions as a tumor suppressor, and loss of function is the primary mechanism.
Dominant Negative (DN)
Some missense mutations may exert a dominant-negative effect by forming inactive heterodimers with wild-type subunits, reducing overall enzyme activity. However, the primary mechanism is haploinsufficiency or complete loss of function.
View complete mutation data:
Gene Ontology (GO)
| • fumarate hydratase activity | • lyase activity |
| • tricarboxylic acid cycle | • mitochondrion |
| • response to hypoxia | • tumor suppressor |
Pathways
• Tricarboxylic acid (TCA) cycle
• Metabolic reprogramming in cancer
• Hypoxia-inducible factor (HIF) signaling
Protein Summary
Fumarate hydratase (FH) is a homotetrameric enzyme that catalyzes the reversible hydration of fumarate to L-malate in the TCA cycle. It is localized in the mitochondria, where it participates in energy production. The protein is also present in the cytosol, where it may play a role in DNA damage response. Mutations in FH lead to loss of enzymatic activity, causing accumulation of fumarate, which is an oncometabolite that stabilizes HIF-1α and promotes tumorigenesis. The protein is encoded by the FH gene located on chromosome 1q43.
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