FH Gene (Fumarate Hydratase): Function, Mutations, and Associated Diseases

A comprehensive biomedical overview of the FH gene, including its genomic context, protein function, expression patterns, and clinical significance in hereditary leiomyomatosis and renal cell cancer (HLRCC).

Gene Information Card

Symbol FH
Full Name Fumarate hydratase
Gene Type Protein coding
Chromosomal Location 1q43
NCBI Gene ID 2271 ncbi.nlm.nih.gov/gene/2271
Ensembl ID ENSG00000091483
UniProt ID P07954
OMIM ID 136850
HGNC ID 3700
Aliases HLRCC, MCL, MCUL1, fumarase

Description

The FH gene encodes fumarate hydratase (also known as fumarase), an enzyme that catalyzes the reversible hydration of fumarate to L-malate in the tricarboxylic acid (TCA) cycle. This mitochondrial enzyme plays a critical role in cellular energy metabolism. Germline mutations in FH are associated with hereditary leiomyomatosis and renal cell cancer (HLRCC), a syndrome characterized by cutaneous and uterine leiomyomas and an aggressive form of renal cell carcinoma. Additionally, biallelic mutations cause fumarase deficiency, a severe neurological disorder. FH acts as a tumor suppressor, and loss of function leads to accumulation of fumarate, which stabilizes hypoxia-inducible factors (HIF) and promotes tumorigenesis.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Hereditary leiomyomatosis and renal cell cancer (HLRCC) Loss-of-function mutations in FH lead to accumulation of fumarate, which inhibits prolyl hydroxylases, stabilizing HIF-1α and promoting angiogenesis and tumor growth. OMIM #150800; ClinVar; multiple studies
Fumarase deficiency Biallelic mutations in FH result in severe deficiency of fumarase activity, causing mitochondrial dysfunction and neurological impairment. OMIM #606812; ClinVar
Renal cell carcinoma (papillary type II) FH mutations predispose to aggressive papillary type II renal cell carcinoma, often with early metastasis. COSMIC; ClinVar; literature
Cutaneous leiomyomas Heterozygous germline mutations cause benign smooth muscle tumors of the skin. OMIM #150800; ClinVar
Uterine leiomyomas (fibroids) FH mutations are associated with multiple and early-onset uterine fibroids. OMIM #150800; ClinVar

Expression Profile

Tissue Expression
Tissue nTPM level
Kidney High High expression in renal tubules
Liver High High expression in hepatocytes
Heart High High expression in cardiac muscle
Skeletal muscle High High expression in skeletal muscle
Brain Moderate Moderate expression in neurons
Skin Low Low expression in skin
Cell Line Expression
Cell Line nTPM Notes
HEK 293 High Embryonic kidney cells show high FH expression
HepG2 High Liver cancer cell line with high FH expression
A549 Moderate Lung carcinoma cell line with moderate FH expression
MCF7 Moderate Breast cancer cell line with moderate FH expression
K562 Low Chronic myelogenous leukemia cell line with low FH expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1431_1432dupAA (p.Lys478Ilefs*?) Frameshift Rare Loss of function; associated with HLRCC
c.1057C>T (p.Arg353Ter) Nonsense Rare Loss of function; associated with HLRCC
c.1396A>G (p.Met466Val) Missense Rare Loss of function; associated with HLRCC
c.1522C>T (p.Arg508Cys) Missense Rare Loss of function; associated with HLRCC
c.698G>A (p.Arg233His) Missense Rare Loss of function; associated with fumarase deficiency
Mutation functional classification

Loss of Function (LOF)

Most FH mutations are loss-of-function, leading to reduced or absent fumarase activity. This causes accumulation of fumarate, which acts as an oncometabolite by inhibiting HIF prolyl hydroxylases, leading to HIF-1α stabilization and pseudohypoxic signaling.

Gain of Function (GOF)

No gain-of-function mutations have been reported for FH. The gene functions as a tumor suppressor, and loss of function is the primary mechanism.

Dominant Negative (DN)

Some missense mutations may exert a dominant-negative effect by forming inactive heterodimers with wild-type subunits, reducing overall enzyme activity. However, the primary mechanism is haploinsufficiency or complete loss of function.

Gene Ontology (GO)

• fumarate hydratase activity • lyase activity
• tricarboxylic acid cycle • mitochondrion
• response to hypoxia • tumor suppressor

Pathways

Tricarboxylic acid (TCA) cycle
Metabolic reprogramming in cancer
Hypoxia-inducible factor (HIF) signaling

Protein Summary

Fumarate hydratase (FH) is a homotetrameric enzyme that catalyzes the reversible hydration of fumarate to L-malate in the TCA cycle. It is localized in the mitochondria, where it participates in energy production. The protein is also present in the cytosol, where it may play a role in DNA damage response. Mutations in FH lead to loss of enzymatic activity, causing accumulation of fumarate, which is an oncometabolite that stabilizes HIF-1α and promotes tumorigenesis. The protein is encoded by the FH gene located on chromosome 1q43.

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