FBXO31: F-box Protein 31 – A Key Regulator of Cell Cycle and DNA Damage Response

Comprehensive genomic and functional analysis of FBXO31, a substrate-recognition component of the SCF ubiquitin ligase complex implicated in tumor suppression and neurodevelopment.

Gene Information Card

Symbol FBXO31
Full Name F-box protein 31
Gene Type Protein coding
Chromosomal Location 16q24.2
NCBI Gene ID 79791 ncbi.nlm.nih.gov/gene/79791
Ensembl ID ENSG00000103257
UniProt ID Q5XUX0
OMIM ID 609102
HGNC ID 16510
Aliases FBX31, F-box only protein 31, MGC13170

Description

FBXO31 (F-box protein 31) is a member of the F-box protein family, characterized by an F-box domain that mediates protein-protein interactions in SCF (SKP1-CUL1-F-box) ubiquitin ligase complexes. FBXO31 functions as the substrate-recognition component, targeting specific proteins for ubiquitination and subsequent proteasomal degradation. It plays critical roles in cell cycle regulation, particularly in G1 phase arrest following DNA damage, by promoting the degradation of cyclin D1. FBXO31 also participates in DNA repair pathways and has been implicated as a tumor suppressor in several cancers, including breast, liver, and gastric cancers. Germline mutations in FBXO31 are associated with autosomal recessive intellectual disability and microcephaly.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Breast cancer Loss of FBXO31 expression leads to cyclin D1 accumulation, promoting cell cycle progression and tumorigenesis. PMID: 19287373, 22922726
Hepatocellular carcinoma FBXO31 downregulation correlates with poor prognosis; FBXO31 suppresses EMT and metastasis via Snail degradation. PMID: 25720963, 29367642
Gastric cancer FBXO31 acts as a tumor suppressor by inducing G1 arrest; reduced expression associated with advanced stage. PMID: 25944712
Autosomal recessive intellectual disability with microcephaly Homozygous loss-of-function mutations in FBXO31 disrupt neurodevelopment. PMID: 23911367
Ovarian cancer FBXO31 overexpression inhibits proliferation and induces apoptosis. PMID: 27683190

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 6.2 Low
Breast 4.8 Low
Liver 3.1 Low
Testis 8.5 Medium
Lymph node 2.0 Not detected
Cell Line Expression
Cell Line nTPM Notes
MCF7 (breast cancer) 5.1 Moderate expression
HepG2 (liver cancer) 3.8 Low expression
HEK293 (embryonic kidney) 7.2 Medium expression
HeLa (cervical cancer) 4.5 Low expression
SH-SY5Y (neuroblastoma) 6.9 Medium expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1003C>T (p.Arg335*) Nonsense Rare Loss of function; truncation of F-box and substrate-binding domains
c.1270G>A (p.Glu424Lys) Missense Rare Impaired substrate recognition; associated with microcephaly
c.1462C>T (p.Arg488Trp) Missense Rare Reduced protein stability; linked to intellectual disability
c.1A>G (p.Met1?) Start loss Very rare Complete loss of translation; pathogenic
Mutation functional classification

Loss of Function (LOF)

Nonsense, frameshift, and start-loss mutations that abolish FBXO31 protein expression or disrupt the F-box domain, leading to impaired ubiquitin ligase activity and accumulation of substrates such as cyclin D1.

Gain of Function (GOF)

No activating mutations have been reported; FBXO31 primarily acts as a tumor suppressor.

Dominant Negative (DN)

Missense mutations in the substrate-binding domain may compete with wild-type FBXO31 for substrate binding, reducing overall degradation capacity.

Gene Ontology (GO)

protein binding (GO:0005515) ubiquitin-dependent protein catabolic process (GO:0006511)
protein ubiquitination (GO:0016567) • cell cycle (GO:0007049)
cellular response to DNA damage stimulus (GO:0006974) cytoplasm (GO:0005737)
nucleus (GO:0005634) • SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (GO:0031146)

Pathways

SCF ubiquitin ligase complex pathway (Reactome: R-HSA-8951664)
G1/S transition (Reactome: R-HSA-69206)
p53-independent DNA damage response (PMID: 19287373)

Protein Summary

FBXO31 encodes a 538-amino acid protein containing an N-terminal F-box domain (residues 36–79) and a C-terminal substrate-binding region. It assembles with SKP1, CUL1, and RBX1 to form the SCF(FBXO31) E3 ubiquitin ligase complex. The protein is predominantly cytoplasmic but can translocate to the nucleus upon DNA damage. Key substrates include cyclin D1 (for G1 arrest) and Snail (for EMT suppression). FBXO31 is widely expressed, with highest levels in testis and brain. Post-translational modifications include phosphorylation, which may regulate its stability and activity.

Related Products

Product name Cat.No. Species Gene ID
FBXO31 Knockout HEK293 Cell Line EDJ-KQ7448 Human 79791 Details Get a Quote
FBXO31 Knockout HCT 116 Cell Line EDJ-KQ31297 Human 79791 Details Get a Quote
FBXO31 Knockout A-549 Cell Line EDJ-KQ32659 Human 79791 Details Get a Quote
FBXO31 Knockout HeLa Cell Line EDJ-KQ32660 Human 79791 Details Get a Quote
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