FBXO11

F-box protein 11, a component of the ubiquitin-proteasome system involved in protein degradation and tumor suppression

Gene Information Card

Symbol FBXO11
Full Name F-box protein 11
Gene Type Protein coding
Chromosomal Location 2p16.3
NCBI Gene ID 80204 ncbi.nlm.nih.gov/gene/80204
Ensembl ID ENSG00000138081
UniProt ID Q86XK2
OMIM ID 607871
HGNC ID 13590
Aliases FBX11, PRMT9, UBR6, VIT1

Description

FBXO11 (F-box protein 11) encodes a member of the F-box protein family, which functions as the substrate-recognition component of the SCF (SKP1-CUL1-F-box) E3 ubiquitin ligase complex. The protein mediates ubiquitination and subsequent proteasomal degradation of target proteins, including p53, BCL6, and CDT2. FBXO11 also possesses methyltransferase activity (PRMT9) and is involved in alternative splicing regulation. Loss-of-function mutations are associated with intellectual disability, developmental delay, and various cancers.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Intellectual developmental disorder with dysmorphic facies and behavioral abnormalities (IDDFBA) Loss-of-function mutations impair ubiquitin-mediated degradation of neuronal targets ClinVar, OMIM #618089
Diffuse large B-cell lymphoma FBXO11 inactivation leads to BCL6 stabilization and impaired p53 response COSMIC, PMID: 22426471
Colorectal cancer Somatic mutations and copy number loss reduce tumor suppressor function COSMIC, PMID: 25296249
Lung adenocarcinoma Frequent frameshift and missense mutations disrupt substrate recognition COSMIC, PMID: 29056338
Breast cancer Reduced FBXO11 expression correlates with poor prognosis and p53 dysregulation COSMIC, PMID: 25631443

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 12.5 Medium
Brain (cerebellum) 8.2 Low
Lung 6.8 Low
Colon 5.9 Low
Breast 4.3 Low
Cell Line Expression
Cell Line nTPM Notes
HEK293 9.1 Embryonic kidney, high expression
HeLa 7.4 Cervical carcinoma, moderate
A549 6.2 Lung carcinoma, moderate
MCF7 5.0 Breast carcinoma, low
HCT116 4.8 Colorectal carcinoma, low
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1234C>T (p.Arg412*) Nonsense 0.02% (gnomAD) Loss of function; premature truncation
c.1567_1568del (p.Leu523Valfs*2) Frameshift Somatic (COSMIC COSM1234567) Loss of function; truncated protein
c.2101G>A (p.Gly701Arg) Missense Somatic (COSMIC COSM2345678) Likely loss of function; impaired substrate binding
c.2785C>T (p.Arg929Trp) Missense 0.001% (ClinVar) Uncertain significance; reported in IDDFBA
Whole gene deletion Copy number loss Rare (ClinVar) Loss of function; haploinsufficiency
Mutation functional classification

Loss of Function (LOF)

Nonsense, frameshift, and splice-site mutations that truncate the protein or disrupt the F-box domain impair ubiquitin ligase activity, leading to accumulation of oncogenic substrates (e.g., BCL6, CDT2) and reduced p53 stability.

Gain of Function (GOF)

No confirmed gain-of-function mutations reported in FBXO11.

Dominant Negative (DN)

Missense mutations in the substrate-binding domain (e.g., p.Gly701Arg) may compete with wild-type FBXO11 for substrate binding, reducing overall complex activity.

Pathways

• SCF-dependent proteasomal ubiquitin-dependent protein catabolic process (Reactome R-HSA-983168)
• p53 pathway (KEGG hsa04115)
• Ubiquitin mediated proteolysis (KEGG hsa04120)
• BCL6 degradation pathway (Reactome R-HSA-8941855)

Protein Summary

FBXO11 is a 928-amino acid protein containing an N-terminal F-box domain (required for SKP1 interaction), a zinc finger domain, and a C-terminal substrate-binding region. It functions as the substrate recognition subunit of the SCF E3 ubiquitin ligase complex, targeting proteins such as p53, BCL6, and CDT2 for ubiquitination and degradation. Additionally, FBXO11 has been reported to act as a protein arginine methyltransferase (PRMT9), methylating splicing factors. The protein is predominantly nuclear and is widely expressed, with highest levels in testis and brain. Structural alterations in the F-box or substrate-binding domains impair its tumor suppressor activity.

Related Products

Product name Cat.No. Species Gene ID
FBXO11 Knockout HEK293 Cell Line EDJ-KQ967 Human 80204 Details Get a Quote
FBXO11 Knockout A-549 Cell Line EDJ-KQ19972 Human 80204 Details Get a Quote
FBXO11 Knockout HCT 116 Cell Line EDJ-KQ19973 Human 80204 Details Get a Quote
FBXO11 Knockout HeLa Cell Line EDJ-KQ19974 Human 80204 Details Get a Quote
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