F5 Gene - Coagulation Factor V

Essential regulator of blood coagulation and thrombosis risk

Gene Information Card

Symbol F5
Full Name Coagulation Factor V
Gene Type protein-coding
Chromosomal Location 1q24.2
NCBI Gene ID 2153 ncbi.nlm.nih.gov/gene/2153
Ensembl ID ENSG00000198734
UniProt ID P12259
OMIM ID 612309
HGNC ID 3542
Aliases FVL, PCCF, RPRGL1, THPH2

Description

The F5 gene encodes coagulation factor V, a critical glycoprotein in the blood coagulation cascade. Factor V circulates as an inactive procofactor and is activated by thrombin or factor Xa to form factor Va, which acts as a cofactor for the prothrombinase complex, accelerating the conversion of prothrombin to thrombin. Mutations in F5, particularly the factor V Leiden variant (p.Arg534Gln), cause activated protein C resistance and increase the risk of venous thromboembolism. Loss-of-function mutations lead to factor V deficiency (parahemophilia), a rare bleeding disorder.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Factor V Deficiency (Parahemophilia) Loss-of-function mutations reduce factor V activity, impairing thrombin generation and causing bleeding tendency. OMIM #227400
Factor V Leiden Thrombophilia Gain-of-function mutation (p.Arg534Gln) renders factor Va resistant to inactivation by activated protein C, increasing thrombosis risk. OMIM #188055
Thrombophilia, Hereditary, Due to Factor V Leiden Same mechanism as above; autosomal dominant inheritance with incomplete penetrance. ClinVar, OMIM #188055

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 12.5 High
Platelets 8.2 Medium
Lung 3.1 Low
Heart 1.8 Low
Kidney 1.5 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 15.0 Hepatocyte cell line; high expression
THP-1 2.3 Monocytic cell line; low expression
A549 1.1 Lung carcinoma; low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1601G>A (p.Arg534Gln) Missense 5-15% in Caucasians Factor V Leiden; gain-of-function; APC resistance
c.1691G>A (p.Arg534Gln) Missense 5-15% in Caucasians Same as above; legacy nomenclature
c.1250delT (p.Leu417fs) Frameshift Rare Loss-of-function; factor V deficiency
c.2869C>T (p.Arg957*) Nonsense Rare Loss-of-function; factor V deficiency
Mutation functional classification

Loss of Function (LOF)

Frameshift, nonsense, and missense mutations that reduce or abolish factor V activity, leading to bleeding disorder (parahemophilia).

Gain of Function (GOF)

Factor V Leiden (p.Arg534Gln) confers resistance to activated protein C, increasing thrombin generation and thrombosis risk.

Dominant Negative (DN)

Not well documented; most loss-of-function mutations are recessive, while factor V Leiden is dominant with incomplete penetrance.

Pathways

KEGG hsa04610 - Complement and coagulation cascades
Reactome R-HSA-140877 - Formation of Fibrin Clot (Clotting Cascade)
Reactome R-HSA-76009 - Platelet Aggregation (Plug Formation)

Protein Summary

Coagulation factor V is a large multidomain glycoprotein (2224 amino acids, ~330 kDa) synthesized primarily in the liver and stored in platelet alpha granules. It circulates as an inactive procofactor and is activated by limited proteolysis by thrombin or factor Xa. Activated factor Va binds to factor Xa on phospholipid surfaces to form the prothrombinase complex, which converts prothrombin to thrombin. Factor V is inactivated by activated protein C. The factor V Leiden variant (p.Arg534Gln) is the most common inherited thrombophilia in Caucasians.

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Displaying Records 1 To 15 Of 619 Records
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