F12 (Coagulation Factor XII)
Hageman Factor – Key Initiator of the Contact Activation System
Gene Information Card
| Symbol | F12 |
|---|---|
| Full Name | Coagulation Factor XII |
| Gene Type | Protein coding |
| Chromosomal Location | 5q35.3 |
| NCBI Gene ID | 2161 ncbi.nlm.nih.gov/gene/2161 |
| Ensembl ID | ENSG00000131187 |
| UniProt ID | P00748 |
| OMIM ID | 610619 |
| HGNC ID | 3530 |
| Aliases | HAF, HAE3, HAF, FXII |
Description
The F12 gene encodes coagulation factor XII (FXII, Hageman factor), a serine protease zymogen that initiates the intrinsic pathway of coagulation and the contact activation system. FXII is activated upon contact with negatively charged surfaces, leading to activation of factor XI and prekallikrein, and triggering bradykinin production. The gene is located on chromosome 5q35.3 and spans approximately 12 kb. Mutations in F12 are associated with hereditary angioedema type III (HAE3) and FXII deficiency (Hageman trait).
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Hereditary angioedema type III | Gain-of-function mutations (e.g., p.Thr328Lys, p.Thr328Arg) increase bradykinin production via enhanced kallikrein activation | ClinVar, OMIM |
| Factor XII deficiency (Hageman trait) | Loss-of-function mutations lead to reduced FXII activity; prolonged aPTT but generally no bleeding diathesis | ClinVar, OMIM |
| Thrombosis risk | Elevated FXII levels or specific variants may contribute to venous thromboembolism risk | NCBI, OMIM |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Liver | 12.5 | High |
| Kidney | 1.2 | Low |
| Lung | 0.8 | Low |
| Heart | 0.5 | Not detected |
| Brain | 0.3 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 15.3 | Hepatocyte cell line; high expression |
| Huh-7 | 10.1 | Hepatocyte cell line; moderate expression |
| HEK293 | 0.2 | Very low expression |
| K562 | 0.1 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.983C>A (p.Thr328Lys) | Missense | Rare | Gain-of-function; associated with HAE3 |
| c.983C>G (p.Thr328Arg) | Missense | Rare | Gain-of-function; associated with HAE3 |
| c.1681C>T (p.Arg561*) | Nonsense | Very rare | Loss-of-function; causes FXII deficiency |
| c.1361G>A (p.Trp454*) | Nonsense | Very rare | Loss-of-function; causes FXII deficiency |
Mutation functional classification
Loss of Function (LOF)
Nonsense and frameshift mutations leading to truncated or absent FXII protein; associated with Hageman trait (FXII deficiency) with prolonged aPTT but no bleeding.
Gain of Function (GOF)
Missense mutations at Thr328 (e.g., p.Thr328Lys, p.Thr328Arg) enhance FXII activation and bradykinin production, causing hereditary angioedema type III.
Dominant Negative (DN)
No well-characterized dominant-negative mutations reported for F12.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Intrinsic pathway of coagulation (Reactome: R-HSA-140837)
• Contact activation system (Reactome: R-HSA-166658)
• Kallikrein-kinin system (Reactome: R-HSA-166662)
Protein Summary
Coagulation factor XII (FXII) is a 596-amino-acid glycoprotein synthesized primarily in the liver and secreted into plasma as a zymogen. It contains an N-terminal fibronectin type II domain, two EGF-like domains, a kringle domain, a proline-rich region, and a C-terminal trypsin-like serine protease domain. Upon contact with anionic surfaces (e.g., glass, kaolin, polyphosphates), FXII undergoes autoactivation to FXIIa, which then activates factor XI and prekallikrein. FXIIa also cleaves high-molecular-weight kininogen to release bradykinin, a potent vasodilator. The protein is essential for the contact activation pathway but not for hemostasis in vivo; deficiency does not cause bleeding.
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