DDX1: DEAD-Box Helicase 1

A Multifunctional RNA Helicase in RNA Metabolism and Cancer

Gene Information Card

Symbol DDX1
Full Name DEAD-Box Helicase 1
Gene Type Protein coding
Chromosomal Location 2p24.3
NCBI Gene ID 1653 ncbi.nlm.nih.gov/gene/1653
Ensembl ID ENSG00000115956
UniProt ID Q92499
OMIM ID 601257
HGNC ID 2734
Aliases DBP-RB, DDX1L, DEAD-box helicase 1

Description

DDX1 encodes a member of the DEAD-box helicase family, characterized by the conserved motif Asp-Glu-Ala-Asp (DEAD). This RNA helicase is involved in multiple aspects of RNA metabolism, including pre-mRNA splicing, ribosome biogenesis, RNA transport, and translation initiation. DDX1 also participates in DNA repair and transcriptional regulation. Overexpression and amplification of DDX1 are observed in several cancers, particularly neuroblastoma and breast cancer, where it may contribute to tumorigenesis and chemoresistance.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Neuroblastoma Amplification of DDX1 at 2p24.3 is frequently co-amplified with MYCN, enhancing cell proliferation and survival. COSMIC, ClinVar
Breast Cancer DDX1 overexpression correlates with poor prognosis and may promote metastasis via RNA processing alterations. COSMIC, NCBI
Retinoblastoma DDX1 interacts with RB1 protein; altered expression may disrupt cell cycle control. UniProt, OMIM
Ovarian Cancer DDX1 upregulation is associated with chemoresistance and tumor progression. COSMIC

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 15.2 High
Bone Marrow 10.8 Medium
Lymph Node 9.5 Medium
Brain 7.3 Medium
Breast 6.1 Low
Liver 4.8 Low
Cell Line Expression
Cell Line nTPM Notes
HEK293 12.5 Embryonic kidney; high expression
HeLa 11.0 Cervical carcinoma; moderate-high
MCF7 9.2 Breast cancer; moderate
SH-SY5Y 14.1 Neuroblastoma; very high
A549 7.8 Lung cancer; moderate
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1012G>A (p.Gly338Arg) Missense <0.1% Unknown functional impact; reported in COSMIC
c.1543C>T (p.Arg515Trp) Missense <0.1% Potential loss of helicase activity
Amplification Copy number gain ~15% in neuroblastoma Increased DDX1 expression; associated with MYCN co-amplification
Mutation functional classification

Loss of Function (LOF)

Missense mutations in helicase domain (e.g., p.Arg515Trp) may impair ATPase or RNA unwinding activity.

Gain of Function (GOF)

Gene amplification leading to overexpression is considered a gain-of-function event in neuroblastoma and breast cancer.

Dominant Negative (DN)

No confirmed dominant-negative mutations reported.

Pathways

• Spliceosome (KEGG hsa03040)
• RNA transport (KEGG hsa03013)
• Ribosome biogenesis in eukaryotes (KEGG hsa03008)
• MYCN amplification pathway in neuroblastoma

Protein Summary

DDX1 is a 740-amino acid DEAD-box RNA helicase that localizes to both nucleus and cytoplasm. It contains a conserved helicase core with ATP-binding and RNA unwinding domains, plus an N-terminal domain for protein-protein interactions. DDX1 facilitates RNA secondary structure remodeling during splicing, translation, and ribosome assembly. It also interacts with the retinoblastoma protein (RB1) and is implicated in DNA double-strand break repair via homologous recombination. In cancer, DDX1 amplification drives oncogenic RNA processing and stress adaptation.

Related Products

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DDX17 Knockout HCT 116 Cell Line EDJ-KQ31910 Human 10521 Details Get a Quote
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DDX19B Knockout HEK293 Cell Line EDJ-KQ51060 Human 11269 Details Get a Quote
DDX19A Knockout HEK293 Cell Line EDJ-KQ51444 Human 55308 Details Get a Quote
DDX19B Knockout HeLa Cell Line EDJ-KQ55619 Human 11269 Details Get a Quote
DDX19A Knockout HeLa Cell Line EDJ-KQ56576 Human 55308 Details Get a Quote
DDX11 Knockout A-549 Cell Line EDJ-KQ61546 Human 1663 Details Get a Quote
DDX19B Knockout A-549 Cell Line EDJ-KQ64118 Human 11269 Details Get a Quote
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DDX19B Knockout HCT 116 Cell Line EDJ-KQ72562 Human 11269 Details Get a Quote
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