CUBN Gene (Cubilin): Structure, Function, and Clinical Significance
A comprehensive overview of the CUBN gene, its protein product cubilin, associated diseases, expression patterns, and mutations.
Gene Information Card
| Symbol | CUBN |
|---|---|
| Full Name | Cubilin |
| Gene Type | Protein coding |
| Chromosomal Location | 10p13 |
| NCBI Gene ID | 8029 ncbi.nlm.nih.gov/gene/8029 |
| Ensembl ID | ENSG00000197980 |
| UniProt ID | O60494 |
| OMIM ID | 602997 |
| HGNC ID | 2548 |
| Aliases | MGA1, gp280 |
Description
The CUBN gene encodes cubilin, a large endocytic receptor protein primarily expressed in the renal proximal tubule and intestinal epithelium. Cubilin plays a critical role in the reabsorption of albumin and other filtered proteins in the kidney, and in the intestinal absorption of vitamin B12 (cobalamin) in complex with intrinsic factor. It is a peripheral membrane protein that requires the co-receptor amnionless (AMN) for membrane attachment and internalization. Mutations in CUBN are associated with Imerslund-Gräsbeck syndrome (a form of hereditary megaloblastic anemia) and have been linked to chronic kidney disease and albuminuria.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Imerslund-Gräsbeck syndrome (IGS) | Loss-of-function mutations in CUBN impair vitamin B12 absorption, leading to megaloblastic anemia and proteinuria. | OMIM, ClinVar |
| Chronic kidney disease (CKD) | Common variants in CUBN are associated with albuminuria and reduced estimated glomerular filtration rate (eGFR), contributing to CKD risk. | GWAS, ClinVar |
| Megaloblastic anemia | Vitamin B12 deficiency due to cubilin dysfunction leads to impaired DNA synthesis and megaloblastic changes in erythroid precursors. | OMIM |
| Proteinuria | Defective cubilin in the proximal tubule reduces albumin reabsorption, resulting in low-molecular-weight proteinuria. | OMIM, PubMed |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Kidney | High | High |
| Small intestine | High | High |
| Thyroid | Low | Low |
| Lung | Low | Low |
| Liver | Low | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HEK 293 | Moderate | Used for functional studies |
| Caco-2 | High | Intestinal epithelial cell line |
| HK-2 | High | Renal proximal tubule cell line |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.3916C>T (p.Arg1306Ter) | Nonsense | Rare | Loss of function; causes Imerslund-Gräsbeck syndrome |
| c.4130A>G (p.Tyr1377Cys) | Missense | Rare | Loss of function; associated with IGS |
| rs1801239 (p.Ile2984Val) | Missense | Common (MAF ~0.2) | Risk allele for albuminuria and CKD |
Mutation functional classification
Loss of Function (LOF)
Most pathogenic mutations in CUBN are loss-of-function, leading to impaired vitamin B12 absorption and protein reabsorption, causing IGS and proteinuria.
Gain of Function (GOF)
No gain-of-function mutations have been reported for CUBN.
Dominant Negative (DN)
No dominant-negative effects have been described; CUBN mutations are typically autosomal recessive.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Vitamin B12 absorption and transport
• Receptor-mediated endocytosis in renal proximal tubule
• Protein reabsorption in kidney
Protein Summary
Cubilin is a 460 kDa peripheral membrane glycoprotein with a large extracellular domain containing 27 CUB domains, which mediate ligand binding. It lacks a transmembrane domain and relies on interaction with amnionless (AMN) for membrane anchoring and endocytosis. Cubilin binds to intrinsic factor-vitamin B12 complex in the intestine and to albumin, transferrin, and other proteins in the renal tubule. It is essential for vitamin B12 homeostasis and protein reabsorption, and its dysfunction leads to clinical phenotypes such as megaloblastic anemia and proteinuria.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CUBN Knockout HEK293 Cell Line | EDJ-KQ6160 | Human | 8029 | Details Get a Quote |
| CUBN Knockout HeLa Cell Line | EDJ-KQ54815 | Human | 8029 | Details Get a Quote |
| CUBN Knockout A-549 Cell Line | EDJ-KQ63304 | Human | 8029 | Details Get a Quote |
| CUBN Knockout HCT 116 Cell Line | EDJ-KQ71775 | Human | 8029 | Details Get a Quote |
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