CUBN Gene (Cubilin): Structure, Function, and Clinical Significance

A comprehensive overview of the CUBN gene, its protein product cubilin, associated diseases, expression patterns, and mutations.

Gene Information Card

Symbol CUBN
Full Name Cubilin
Gene Type Protein coding
Chromosomal Location 10p13
NCBI Gene ID 8029 ncbi.nlm.nih.gov/gene/8029
Ensembl ID ENSG00000197980
UniProt ID O60494
OMIM ID 602997
HGNC ID 2548
Aliases MGA1, gp280

Description

The CUBN gene encodes cubilin, a large endocytic receptor protein primarily expressed in the renal proximal tubule and intestinal epithelium. Cubilin plays a critical role in the reabsorption of albumin and other filtered proteins in the kidney, and in the intestinal absorption of vitamin B12 (cobalamin) in complex with intrinsic factor. It is a peripheral membrane protein that requires the co-receptor amnionless (AMN) for membrane attachment and internalization. Mutations in CUBN are associated with Imerslund-Gräsbeck syndrome (a form of hereditary megaloblastic anemia) and have been linked to chronic kidney disease and albuminuria.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Imerslund-Gräsbeck syndrome (IGS) Loss-of-function mutations in CUBN impair vitamin B12 absorption, leading to megaloblastic anemia and proteinuria. OMIM, ClinVar
Chronic kidney disease (CKD) Common variants in CUBN are associated with albuminuria and reduced estimated glomerular filtration rate (eGFR), contributing to CKD risk. GWAS, ClinVar
Megaloblastic anemia Vitamin B12 deficiency due to cubilin dysfunction leads to impaired DNA synthesis and megaloblastic changes in erythroid precursors. OMIM
Proteinuria Defective cubilin in the proximal tubule reduces albumin reabsorption, resulting in low-molecular-weight proteinuria. OMIM, PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Kidney High High
Small intestine High High
Thyroid Low Low
Lung Low Low
Liver Low Low
Cell Line Expression
Cell Line nTPM Notes
HEK 293 Moderate Used for functional studies
Caco-2 High Intestinal epithelial cell line
HK-2 High Renal proximal tubule cell line
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.3916C>T (p.Arg1306Ter) Nonsense Rare Loss of function; causes Imerslund-Gräsbeck syndrome
c.4130A>G (p.Tyr1377Cys) Missense Rare Loss of function; associated with IGS
rs1801239 (p.Ile2984Val) Missense Common (MAF ~0.2) Risk allele for albuminuria and CKD
Mutation functional classification

Loss of Function (LOF)

Most pathogenic mutations in CUBN are loss-of-function, leading to impaired vitamin B12 absorption and protein reabsorption, causing IGS and proteinuria.

Gain of Function (GOF)

No gain-of-function mutations have been reported for CUBN.

Dominant Negative (DN)

No dominant-negative effects have been described; CUBN mutations are typically autosomal recessive.

Pathways

Vitamin B12 absorption and transport
Receptor-mediated endocytosis in renal proximal tubule
Protein reabsorption in kidney

Protein Summary

Cubilin is a 460 kDa peripheral membrane glycoprotein with a large extracellular domain containing 27 CUB domains, which mediate ligand binding. It lacks a transmembrane domain and relies on interaction with amnionless (AMN) for membrane anchoring and endocytosis. Cubilin binds to intrinsic factor-vitamin B12 complex in the intestine and to albumin, transferrin, and other proteins in the renal tubule. It is essential for vitamin B12 homeostasis and protein reabsorption, and its dysfunction leads to clinical phenotypes such as megaloblastic anemia and proteinuria.

Related Products

Product name Cat.No. Species Gene ID
CUBN Knockout HEK293 Cell Line EDJ-KQ6160 Human 8029 Details Get a Quote
CUBN Knockout HeLa Cell Line EDJ-KQ54815 Human 8029 Details Get a Quote
CUBN Knockout A-549 Cell Line EDJ-KQ63304 Human 8029 Details Get a Quote
CUBN Knockout HCT 116 Cell Line EDJ-KQ71775 Human 8029 Details Get a Quote
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