CNTNAP2 (Contactin Associated Protein 2): A Key Player in Neurodevelopmental Disorders
Explore the genomic landscape, expression, and clinical significance of CNTNAP2, a gene implicated in autism, epilepsy, and language disorders.
Gene Information Card
| Symbol | CNTNAP2 |
|---|---|
| Full Name | Contactin Associated Protein 2 |
| Gene Type | Protein coding |
| Chromosomal Location | 7q35-q36.1 |
| NCBI Gene ID | 26047 ncbi.nlm.nih.gov/gene/26047 |
| Ensembl ID | ENSG00000174469 |
| UniProt ID | Q9UHC6 |
| OMIM ID | 604569 |
| HGNC ID | 13830 |
| Aliases | CASPR2, NRXN4, DKFZp781D1846 |
Description
CNTNAP2 encodes contactin-associated protein 2 (CASPR2), a member of the neurexin family of cell adhesion molecules. It is predominantly expressed in the nervous system, where it plays a critical role in neuronal-glial interactions, clustering of voltage-gated potassium channels at the juxtaparanodal regions of myelinated axons, and in the development of neural circuits. Mutations and variants in CNTNAP2 have been associated with a spectrum of neurodevelopmental disorders, including autism spectrum disorder (ASD), intellectual disability, epilepsy, and specific language impairment. The gene is also implicated in cortical development and synaptic function, making it a key candidate for understanding the molecular basis of these conditions.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Autism Spectrum Disorder | Rare copy number variants and single nucleotide variants disrupt synaptic function and neuronal connectivity. | ClinVar, OMIM |
| Epilepsy (focal and generalized) | Loss-of-function mutations impair potassium channel clustering, leading to neuronal hyperexcitability. | ClinVar, OMIM |
| Specific Language Impairment | Common variants in intronic regions affect gene expression and neuronal migration. | OMIM, PubMed |
| Intellectual Disability | Homozygous and compound heterozygous mutations cause severe neurodevelopmental phenotypes. | OMIM, ClinVar |
| Schizophrenia | Association studies link CNTNAP2 variants to increased risk, possibly via altered synaptic pruning. | OMIM, PubMed |
| Tourette Syndrome | Rare variants may contribute to tic disorders through dopaminergic pathway modulation. | OMIM, PubMed |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain (cerebral cortex) | High (nTPM ~ 30) | Highest expression in cortical regions, especially in layers II-V. |
| Cerebellum | Moderate (nTPM ~ 15) | Expressed in Purkinje cells and granule cells. |
| Spinal cord | Low (nTPM ~ 5) | Present in motor neurons and interneurons. |
| Heart | Low (nTPM ~ 2) | Minimal expression, not functionally significant. |
| Liver | Not detected | No significant expression. |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | High | Neuronal-like cells, used for neurodevelopmental studies. |
| U87 (glioblastoma) | Moderate | Glial cells, relevant for glial-neuronal interactions. |
| HEK293 (embryonic kidney) | Low | Used for recombinant expression studies. |
| HepG2 (hepatocellular carcinoma) | Not detected | No endogenous expression. |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.3700delG (frameshift) | Frameshift deletion | Rare | Loss of function, associated with epilepsy and intellectual disability. |
| p.R1117X (nonsense) | Nonsense | Rare | Premature truncation, loss of function, linked to autism. |
| p.T1275M (missense) | Missense | Rare | Altered protein stability, possibly dominant-negative effect. |
| Intronic variant rs7794745 | SNV | Common (minor allele frequency ~0.3) | Associated with language impairment, affects splicing. |
| Copy number loss (exon 1-3) | CNV | Rare | Haploinsufficiency, causes Pitt-Hopkins-like phenotype. |
Mutation functional classification
Loss of Function (LOF)
Most pathogenic mutations are loss-of-function, leading to reduced CASPR2 protein levels or disrupted interactions with contactin and potassium channels, impairing neuronal signaling.
Gain of Function (GOF)
No clear gain-of-function mutations have been reported; the gene primarily acts as a tumor suppressor in neurodevelopment, and gain-of-function is not a recognized mechanism.
Dominant Negative (DN)
Some missense mutations may exert dominant-negative effects by forming non-functional complexes with wild-type CASPR2, disrupting normal protein function.
View complete mutation data:
Gene Ontology (GO)
| • cell adhesion | • protein binding |
| • voltage-gated potassium channel complex | • axon guidance |
| • synaptic transmission | • nervous system development |
| • myelination | • neuron projection |
Pathways
• Neurexin and neuroligin signaling
• Potassium channel clustering
• Axon guidance and neuronal migration
• Synaptic vesicle cycle
Protein Summary
CASPR2 is a single-pass type I membrane protein with a large extracellular domain containing multiple laminin G, EGF-like, and fibronectin type III domains. It interacts with contactin-2 (CNTN2) to mediate cell adhesion and is essential for the localization of voltage-gated potassium channels (Kv1.1/Kv1.2) at the juxtaparanodal region of myelinated axons. CASPR2 also plays roles in neuronal migration, dendritic arborization, and synaptic plasticity. Its cytoplasmic domain interacts with PDZ-domain proteins, linking it to intracellular signaling pathways. Mutations affecting CASPR2 function lead to altered neuronal excitability and connectivity, underpinning various neurodevelopmental disorders.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CNTNAP2 Knockout HEK293 Cell Line | EDJ-KQ8366 | Human | 26047 | Details Get a Quote |
| CNTNAP2 Knockout HeLa Cell Line | EDJ-KQ55874 | Human | 26047 | Details Get a Quote |
| CNTNAP2 Knockout A-549 Cell Line | EDJ-KQ64364 | Human | 26047 | Details Get a Quote |
| CNTNAP2 Knockout HCT 116 Cell Line | EDJ-KQ72814 | Human | 26047 | Details Get a Quote |
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