CHURC1-FNTB readthrough gene: A novel fusion transcript with potential implications in cancer

The CHURC1-FNTB readthrough gene produces a chimeric protein combining Churchill domain and farnesyltransferase beta subunits, with potential roles in protein prenylation and gene regulation.

Gene Information Card

Symbol CHURC1-FNTB
Full Name CHURC1-FNTB readthrough (NMD candidate)
Gene Type Readthrough transcript (protein coding)
Chromosomal Location Chromosome 14 (14q23-q24) – exact coordinates from Ensembl
NCBI Gene ID 100528032 ncbi.nlm.nih.gov/gene/100528032
Ensembl ID ENSG00000259090
UniProt ID Q6P2E0 (CHURC1) and P49354 (FNTB) – no single fusion protein entry
OMIM ID Not assigned (readthrough gene)
HGNC ID HGNC:40057 (CHURC1-FNTB)
Aliases CHURC1-FNTB readthrough, CHURC1-FNTB fusion, FNTB-CHURC1

Description

CHURC1-FNTB is a readthrough gene that produces a transcript containing exons from both CHURC1 (Churchill domain containing 1) and FNTB (farnesyltransferase, CAAX box, beta). This readthrough event results in a chimeric mRNA that may encode a fusion protein combining the N-terminal Churchill domain of CHURC1 with the C-terminal farnesyltransferase beta subunit of FNTB. The gene is located on chromosome 14q23-q24. The readthrough transcript is predicted to be a candidate for nonsense-mediated decay (NMD), but if translated, the fusion protein could potentially alter protein prenylation and gene regulation. The biological significance is under investigation, with potential implications in cancer and developmental processes.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (general) Potential dysregulation of protein prenylation due to fusion of FNTB beta subunit with CHURC1, affecting oncogenic signaling pathways (e.g., RAS). Inferred from FNTB's known role in farnesylation of RAS and other oncoproteins; readthrough transcripts may alter FNTB function.
Developmental disorders CHURC1 is involved in neural development; fusion may disrupt its function. Inferred from CHURC1's known role in gene regulation during development.

Expression Profile

Tissue Expression
Tissue nTPM level
Testis Low (based on GTEx data for CHURC1 and FNTB) Low expression
Brain Low to moderate Moderate expression in some regions
Liver Moderate Moderate expression
Kidney Low Low expression
Cell Line Expression
Cell Line nTPM Notes
HeLa Low Readthrough transcript detected in some cancer cell lines
MCF7 Low Potential expression in breast cancer cells
A549 Low Lung cancer cell line with possible expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
No specific variants reported N/A N/A No known disease-associated mutations in CHURC1-FNTB readthrough gene
Mutation functional classification

Loss of Function (LOF)

Not characterized; if readthrough transcript is degraded by NMD, loss of fusion protein may occur, but no functional impact known.

Gain of Function (GOF)

Potential gain of function if fusion protein is stable and alters farnesyltransferase activity or subcellular localization.

Dominant Negative (DN)

Possible if fusion protein interferes with normal FNTB or CHURC1 function.

Gene Ontology (GO)

prenyltransferase activity (GO:0004659) nucleus (GO:0005634)
zinc ion binding (CHURC1 domain) (GO:0008270) • protein modification process (farnesylation) (GO:0006464)

Pathways

Protein farnesylation (RAS pathway)
Gene regulation (CHURC1-related)

Protein Summary

The CHURC1-FNTB readthrough gene potentially encodes a fusion protein that includes the Churchill domain from CHURC1 and the beta subunit of farnesyltransferase (FNTB). The Churchill domain is a zinc-binding domain involved in transcriptional regulation during development, while FNTB is the catalytic subunit of the farnesyltransferase enzyme that attaches farnesyl groups to proteins such as RAS. If translated, the fusion protein could have altered enzymatic activity or subcellular localization, potentially impacting cell signaling and gene expression. However, the readthrough transcript is predicted to be a target for nonsense-mediated decay, so the actual protein may not be produced in significant amounts. Further studies are needed to confirm the existence and function of the fusion protein.

Related Products

Product name Cat.No. Species Gene ID
CHURC1-FNTB Knockout HEK293 Cell Line EDJ-KQ52500 Human 100529261 Details Get a Quote
CHURC1-FNTB Knockout HeLa Cell Line EDJ-KQ60963 Human 100529261 Details Get a Quote
CHURC1-FNTB Knockout A-549 Cell Line EDJ-KQ69438 Human 100529261 Details Get a Quote
CHURC1-FNTB Knockout HCT 116 Cell Line EDJ-KQ77789 Human 100529261 Details Get a Quote
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