CHURC1-FNTB readthrough gene: A novel fusion transcript with potential implications in cancer
The CHURC1-FNTB readthrough gene produces a chimeric protein combining Churchill domain and farnesyltransferase beta subunits, with potential roles in protein prenylation and gene regulation.
Gene Information Card
| Symbol | CHURC1-FNTB |
|---|---|
| Full Name | CHURC1-FNTB readthrough (NMD candidate) |
| Gene Type | Readthrough transcript (protein coding) |
| Chromosomal Location | Chromosome 14 (14q23-q24) – exact coordinates from Ensembl |
| NCBI Gene ID | 100528032 ncbi.nlm.nih.gov/gene/100528032 |
| Ensembl ID | ENSG00000259090 |
| UniProt ID | Q6P2E0 (CHURC1) and P49354 (FNTB) – no single fusion protein entry |
| OMIM ID | Not assigned (readthrough gene) |
| HGNC ID | HGNC:40057 (CHURC1-FNTB) |
| Aliases | CHURC1-FNTB readthrough, CHURC1-FNTB fusion, FNTB-CHURC1 |
Description
CHURC1-FNTB is a readthrough gene that produces a transcript containing exons from both CHURC1 (Churchill domain containing 1) and FNTB (farnesyltransferase, CAAX box, beta). This readthrough event results in a chimeric mRNA that may encode a fusion protein combining the N-terminal Churchill domain of CHURC1 with the C-terminal farnesyltransferase beta subunit of FNTB. The gene is located on chromosome 14q23-q24. The readthrough transcript is predicted to be a candidate for nonsense-mediated decay (NMD), but if translated, the fusion protein could potentially alter protein prenylation and gene regulation. The biological significance is under investigation, with potential implications in cancer and developmental processes.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Cancer (general) | Potential dysregulation of protein prenylation due to fusion of FNTB beta subunit with CHURC1, affecting oncogenic signaling pathways (e.g., RAS). | Inferred from FNTB's known role in farnesylation of RAS and other oncoproteins; readthrough transcripts may alter FNTB function. |
| Developmental disorders | CHURC1 is involved in neural development; fusion may disrupt its function. | Inferred from CHURC1's known role in gene regulation during development. |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Testis | Low (based on GTEx data for CHURC1 and FNTB) | Low expression |
| Brain | Low to moderate | Moderate expression in some regions |
| Liver | Moderate | Moderate expression |
| Kidney | Low | Low expression |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa | Low | Readthrough transcript detected in some cancer cell lines |
| MCF7 | Low | Potential expression in breast cancer cells |
| A549 | Low | Lung cancer cell line with possible expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| No specific variants reported | N/A | N/A | No known disease-associated mutations in CHURC1-FNTB readthrough gene |
Mutation functional classification
Loss of Function (LOF)
Not characterized; if readthrough transcript is degraded by NMD, loss of fusion protein may occur, but no functional impact known.
Gain of Function (GOF)
Potential gain of function if fusion protein is stable and alters farnesyltransferase activity or subcellular localization.
Dominant Negative (DN)
Possible if fusion protein interferes with normal FNTB or CHURC1 function.
View complete mutation data:
Gene Ontology (GO)
| • prenyltransferase activity (GO:0004659) | • nucleus (GO:0005634) |
| • zinc ion binding (CHURC1 domain) (GO:0008270) | • protein modification process (farnesylation) (GO:0006464) |
Pathways
• Protein farnesylation (RAS pathway)
• Gene regulation (CHURC1-related)
Protein Summary
The CHURC1-FNTB readthrough gene potentially encodes a fusion protein that includes the Churchill domain from CHURC1 and the beta subunit of farnesyltransferase (FNTB). The Churchill domain is a zinc-binding domain involved in transcriptional regulation during development, while FNTB is the catalytic subunit of the farnesyltransferase enzyme that attaches farnesyl groups to proteins such as RAS. If translated, the fusion protein could have altered enzymatic activity or subcellular localization, potentially impacting cell signaling and gene expression. However, the readthrough transcript is predicted to be a target for nonsense-mediated decay, so the actual protein may not be produced in significant amounts. Further studies are needed to confirm the existence and function of the fusion protein.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CHURC1-FNTB Knockout HEK293 Cell Line | EDJ-KQ52500 | Human | 100529261 | Details Get a Quote |
| CHURC1-FNTB Knockout HeLa Cell Line | EDJ-KQ60963 | Human | 100529261 | Details Get a Quote |
| CHURC1-FNTB Knockout A-549 Cell Line | EDJ-KQ69438 | Human | 100529261 | Details Get a Quote |
| CHURC1-FNTB Knockout HCT 116 Cell Line | EDJ-KQ77789 | Human | 100529261 | Details Get a Quote |
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