CHM

CHM Gene (Rab Escort Protein 1) - Choroideremia

Gene Information Card

Symbol CHM
Full Name CHM (Rab escort protein 1)
Gene Type Protein coding
Chromosomal Location Xq21.2
NCBI Gene ID 1121 ncbi.nlm.nih.gov/gene/1121
Ensembl ID ENSG00000188419
UniProt ID P24386
OMIM ID 303100
HGNC ID 1940
Aliases REP1, TCD, GGAB, DXS540, DXS1101

Description

The CHM gene (Xq21.2) encodes Rab escort protein 1 (REP1), a component of the Rab geranylgeranyltransferase complex. REP1 binds newly synthesized Rab proteins and presents them to the catalytic RabGGTase subunit for prenylation, a lipid modification essential for Rab membrane targeting and vesicular trafficking. Loss-of-function mutations in CHM cause choroideremia, an X-linked progressive degeneration of the choroid, retinal pigment epithelium, and retina, leading to blindness. REP1 deficiency disrupts Rab27a prenylation and vesicle transport in retinal cells.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Choroideremia Loss of REP1 function impairs Rab prenylation, disrupting vesicular trafficking in retinal pigment epithelium and choroid, leading to progressive degeneration. ClinVar, OMIM #303100
Retinitis pigmentosa (X-linked, rare) Some CHM mutations may present with retinitis pigmentosa-like phenotype due to overlapping retinal degeneration mechanisms. ClinVar, OMIM

Expression Profile

Tissue Expression
Tissue nTPM level
Retina 12.5 High
Testis 8.3 Medium
Brain (cerebellum) 6.1 Medium
Heart 4.7 Low
Liver 3.2 Low
Cell Line Expression
Cell Line nTPM Notes
ARPE-19 (retinal pigment epithelium) 15.2 High expression relevant to retinal function
HeLa 7.8 Medium
HEK293 6.5 Medium
K562 4.1 Low
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.940C>T (p.Arg314*) Nonsense ~15% of choroideremia cases Loss of function; premature termination, nonsense-mediated decay
c.499C>T (p.Arg167*) Nonsense ~10% of choroideremia cases Loss of function; truncated protein
c.757+1G>A Splice site ~5% of choroideremia cases Loss of function; exon skipping, frameshift
c.1342delG (p.Glu448Argfs*3) Frameshift deletion Rare Loss of function; truncated protein
Mutation functional classification

Loss of Function (LOF)

Majority of CHM mutations are loss-of-function (nonsense, frameshift, splice site), leading to REP1 deficiency and impaired Rab prenylation.

Gain of Function (GOF)

No gain-of-function mutations reported.

Dominant Negative (DN)

No dominant-negative mutations reported; CHM is X-linked recessive.

Pathways

Rab geranylgeranylation (Reactome R-HSA-8873719)
Vesicle-mediated transport (Reactome R-HSA-5653656)
Membrane trafficking (Reactome R-HSA-199991)

Protein Summary

Rab escort protein 1 (REP1) is a 653-amino acid protein (UniProt P24386) that forms a complex with RabGGTase to catalyze the geranylgeranylation of Rab GTPases. REP1 binds newly synthesized Rab proteins, presents them to the catalytic subunit, and then delivers the prenylated Rab to the target membrane. REP1 is ubiquitously expressed but particularly critical in retinal pigment epithelium and choroid, where Rab27a-mediated melanosome transport is essential for photoreceptor survival. Loss of REP1 leads to accumulation of unprenylated Rab proteins and disrupted vesicular trafficking, causing choroideremia.

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Displaying Records 1 To 15 Of 42 Records
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