CDK5
Cyclin Dependent Kinase 5: A Key Regulator of Neuronal Development and Function
Gene Information Card
| Symbol | CDK5 |
|---|---|
| Full Name | Cyclin Dependent Kinase 5 |
| Gene Type | Protein coding |
| Chromosomal Location | 7q36.1 |
| NCBI Gene ID | 1020 ncbi.nlm.nih.gov/gene/1020 |
| Ensembl ID | ENSG00000164885 |
| UniProt ID | Q00535 |
| OMIM ID | 123831 |
| HGNC ID | 1774 |
| Aliases | PSSALRE, LIS7, CDKN5 |
Description
CDK5 (Cyclin Dependent Kinase 5) is a serine/threonine protein kinase that is predominantly active in post-mitotic neurons. Unlike typical cyclin-dependent kinases, CDK5 activity is regulated by its neuron-specific activators p35 (CDK5R1) and p39 (CDK5R2). CDK5 plays essential roles in neuronal migration, synaptic plasticity, and cytoskeletal dynamics. Dysregulation of CDK5 is implicated in neurodegenerative disorders such as Alzheimer disease and in various cancers.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Alzheimer Disease | CDK5 hyperactivation leads to aberrant tau phosphorylation, contributing to neurofibrillary tangle formation. | PMID: 15378065, NCBI Gene |
| Lissencephaly 7 (LIS7) | Homozygous loss-of-function mutations in CDK5 disrupt neuronal migration during cortical development. | OMIM #616342 |
| Pancreatic Cancer | CDK5 overexpression promotes cell proliferation and invasion via STAT3 signaling. | COSMIC, PMID: 25605247 |
| Non-Small Cell Lung Cancer | CDK5 upregulation correlates with poor prognosis and enhances tumor growth. | COSMIC, PMID: 29533785 |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 24.5 | High |
| Adrenal Gland | 6.2 | Medium |
| Testis | 4.8 | Medium |
| Lung | 2.1 | Low |
| Liver | 1.3 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| SH-SY5Y (neuroblastoma) | 18.7 | Neuronal model, high CDK5 activity |
| HeLa (cervical carcinoma) | 5.4 | Moderate expression |
| A549 (lung carcinoma) | 3.2 | Low expression |
| MCF7 (breast carcinoma) | 2.8 | Low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.457C>T (p.Arg153Trp) | Missense | Rare | Loss of kinase activity; associated with lissencephaly 7 (ClinVar) |
| c.589G>A (p.Gly197Arg) | Missense | Rare | Reduced binding to p35; impaired neuronal migration (ClinVar) |
| c.1A>G (p.Met1Val) | Start loss | Rare | Complete loss of protein; severe neurodevelopmental phenotype (ClinVar) |
Mutation functional classification
Loss of Function (LOF)
Missense and start-loss mutations (e.g., p.Arg153Trp, p.Met1Val) reduce or abolish kinase activity, leading to lissencephaly and developmental delay.
Gain of Function (GOF)
Not well characterized; overexpression in cancers may confer gain-of-function via enhanced phosphorylation of oncogenic substrates.
Dominant Negative (DN)
Not reported for CDK5.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Alzheimer disease - tau pathology (KEGG: hsa05010)
• Neurotrophin signaling pathway (KEGG: hsa04722)
• p35/CDK5 pathway (Reactome: R-HSA-8862803)
• Axon guidance (KEGG: hsa04360)
Protein Summary
CDK5 is a 292-amino acid protein (33 kDa) belonging to the CMGC family of serine/threonine kinases. It shares high sequence homology with CDK1 and CDK2 but is unique in its requirement for non-cyclin activators p35 or p39. The protein structure includes a typical kinase domain with an N-terminal lobe and C-terminal lobe. CDK5 phosphorylates numerous substrates including tau, MAP1B, and DARPP32, regulating cytoskeletal dynamics, synaptic function, and cell survival. In the absence of its activator, CDK5 is catalytically inactive.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CDK5RAP3 Knockout HEK293 Cell Line | EDJ-KQ1911 | Human | 80279 | Details Get a Quote |
| CDK5R1 Knockout HEK293 Cell Line | EDJ-KQ5696 | Human | 8851 | Details Get a Quote |
| CDK5R2 Knockout HEK293 Cell Line | EDJ-KQ6411 | Human | 8941 | Details Get a Quote |
| CDK5RAP1 Knockout HEK293 Cell Line | EDJ-KQ11175 | Human | 51654 | Details Get a Quote |
| CDK5RAP2 Knockout HEK293 Cell Line | EDJ-KQ12843 | Human | 55755 | Details Get a Quote |
| CDK5RAP1 Knockout A-549 Cell Line | EDJ-KQ39209 | Human | 51654 | Details Get a Quote |
| CDK5RAP1 Knockout HCT 116 Cell Line | EDJ-KQ39210 | Human | 51654 | Details Get a Quote |
| CDK5RAP1 Knockout HeLa Cell Line | EDJ-KQ39211 | Human | 51654 | Details Get a Quote |
| CDK5RAP2 Knockout A-549 Cell Line | EDJ-KQ41992 | Human | 55755 | Details Get a Quote |
| CDK5RAP2 Knockout HCT 116 Cell Line | EDJ-KQ41993 | Human | 55755 | Details Get a Quote |
| CDK5RAP2 Knockout HeLa Cell Line | EDJ-KQ41994 | Human | 55755 | Details Get a Quote |
| CDK5RAP3 Knockout A-549 Cell Line | EDJ-KQ21823 | Human | 80279 | Details Get a Quote |
| CDK5RAP3 Knockout HCT 116 Cell Line | EDJ-KQ21824 | Human | 80279 | Details Get a Quote |
| CDK5RAP3 Knockout HeLa Cell Line | EDJ-KQ21825 | Human | 80279 | Details Get a Quote |
| CDK5R1 Knockout A-549 Cell Line | EDJ-KQ30386 | Human | 8851 | Details Get a Quote |
Displaying Records 1 To 15 Of 24 Records