CDK2: Cyclin-Dependent Kinase 2

A key regulator of the G1/S phase transition in the cell cycle, frequently altered in cancer.

Gene Information Card

Symbol CDK2
Full Name Cyclin-dependent kinase 2
Gene Type Protein coding
Chromosomal Location 12q13.2
NCBI Gene ID 1017 ncbi.nlm.nih.gov/gene/1017
Ensembl ID ENSG00000175063
UniProt ID P24941
OMIM ID 116953
HGNC ID 1771
Aliases p33(CDK2), CDKN2

Description

CDK2 (cyclin-dependent kinase 2) is a serine/threonine protein kinase that plays a critical role in the regulation of the cell cycle, particularly during the G1/S phase transition. It forms active complexes with cyclin E (G1 phase) and cyclin A (S phase), phosphorylating key substrates such as RB1 to promote DNA replication. CDK2 activity is tightly controlled by cyclin binding, phosphorylation, and interaction with CDK inhibitors (e.g., p21, p27). Dysregulation of CDK2 is implicated in various cancers and developmental disorders.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Breast cancer Overexpression and amplification of CDK2 lead to uncontrolled cell proliferation COSMIC, ClinVar
Ovarian cancer CDK2 amplification and activating mutations promote tumorigenesis COSMIC, ClinVar
Lung cancer CDK2 overexpression correlates with poor prognosis and resistance to therapy COSMIC, ClinVar
Melanoma CDK2 mutations and copy number gains drive cell cycle progression COSMIC, ClinVar
Colorectal cancer CDK2 upregulation contributes to genomic instability COSMIC, ClinVar

Expression Profile

Tissue Expression
Tissue nTPM level
Testis 42.3 High
Bone marrow 28.1 High
Lymph node 22.5 High
Colon 15.8 Medium
Lung 12.4 Medium
Brain 6.7 Low
Cell Line Expression
Cell Line nTPM Notes
HeLa (cervical cancer) 35.2 High expression
A549 (lung cancer) 28.9 High expression
MCF7 (breast cancer) 22.1 Medium expression
HEK293 (embryonic kidney) 18.4 Medium expression
K562 (leukemia) 15.3 Medium expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.1A>G (p.Met1?) Missense Rare Loss of start codon, likely loss of function
c.47C>T (p.Ala16Val) Missense 0.01% Reduced kinase activity
c.103G>A (p.Glu35Lys) Missense 0.02% Altered cyclin binding
c.364C>T (p.Arg122Trp) Missense 0.005% Impaired substrate phosphorylation
c.794A>G (p.Asn265Ser) Missense 0.01% Gain of function in some cancers
Mutation functional classification

Loss of Function (LOF)

Mutations affecting the ATP-binding pocket or catalytic residues (e.g., p.Asp145Asn) reduce kinase activity, impairing cell cycle progression.

Gain of Function (GOF)

Activating mutations (e.g., p.Asn265Ser) enhance CDK2 activity, promoting uncontrolled proliferation in cancer.

Dominant Negative (DN)

Mutants that bind cyclins but lack kinase activity (e.g., p.Asp145Asn) can sequester cyclins and inhibit wild-type CDK2 function.

Gene Ontology (GO)

• GO:0004693 - cyclin-dependent protein serine/threonine kinase activity • GO:0007049 - cell cycle
• GO:0051726 - regulation of cell cycle • GO:0000082 - G1/S transition of mitotic cell cycle
• GO:0005634 - nucleus • GO:0005737 - cytoplasm

Pathways

Cell Cycle (KEGG: hsa04110)
p53 signaling pathway (KEGG: hsa04115)
Cellular Senescence (KEGG: hsa04218)
FoxO signaling pathway (KEGG: hsa04068)

Protein Summary

CDK2 is a 298-amino acid serine/threonine kinase (33 kDa) with a typical kinase domain. It is activated by binding to cyclin E or cyclin A and by phosphorylation at Thr160 by CAK (CDK-activating kinase). The active CDK2-cyclin complex phosphorylates substrates including RB1, p107, p130, and CDC25A to drive G1/S transition and S phase progression. CDK2 is negatively regulated by CDK inhibitors p21 (CDKN1A) and p27 (CDKN1B). Structural studies reveal a bilobal kinase fold with an N-terminal lobe (β-sheet) and a C-terminal lobe (α-helical), with the active site cleft between them.

Related Products

Product name Cat.No. Species Gene ID
CDK2 Knockout HEK293 Cell Line EDC07797 Human 1017 Details Get a Quote
CDK2AP1 Knockout HEK293 Cell Line EDJ-KQ2448 Human 8099 Details Get a Quote
CDK2AP2 Knockout HEK293 Cell Line EDJ-KQ6980 Human 10263 Details Get a Quote
CDK20 Knockout HEK293 Cell Line EDJ-KQ8070 Human 23552 Details Get a Quote
CDK2AP1 Knockout A-549 Cell Line EDJ-KQ22971 Human 8099 Details Get a Quote
CDK2AP1 Knockout HCT 116 Cell Line EDJ-KQ22972 Human 8099 Details Get a Quote
CDK2AP1 Knockout HeLa Cell Line EDJ-KQ22973 Human 8099 Details Get a Quote
CDK2AP2 Knockout A-549 Cell Line EDJ-KQ31681 Human 10263 Details Get a Quote
CDK2AP2 Knockout HCT 116 Cell Line EDJ-KQ31682 Human 10263 Details Get a Quote
CDK2AP2 Knockout HeLa Cell Line EDJ-KQ31683 Human 10263 Details Get a Quote
CDK20 Knockout A-549 Cell Line EDJ-KQ32559 Human 23552 Details Get a Quote
CDK20 Knockout HCT 116 Cell Line EDJ-KQ33900 Human 23552 Details Get a Quote
CDK20 Knockout HeLa Cell Line EDJ-KQ33901 Human 23552 Details Get a Quote
Displaying Records 1 To 13 Of 13 Records
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