CDK2: Cyclin-Dependent Kinase 2
A key regulator of the G1/S phase transition in the cell cycle, frequently altered in cancer.
Gene Information Card
| Symbol | CDK2 |
|---|---|
| Full Name | Cyclin-dependent kinase 2 |
| Gene Type | Protein coding |
| Chromosomal Location | 12q13.2 |
| NCBI Gene ID | 1017 ncbi.nlm.nih.gov/gene/1017 |
| Ensembl ID | ENSG00000175063 |
| UniProt ID | P24941 |
| OMIM ID | 116953 |
| HGNC ID | 1771 |
| Aliases | p33(CDK2), CDKN2 |
Description
CDK2 (cyclin-dependent kinase 2) is a serine/threonine protein kinase that plays a critical role in the regulation of the cell cycle, particularly during the G1/S phase transition. It forms active complexes with cyclin E (G1 phase) and cyclin A (S phase), phosphorylating key substrates such as RB1 to promote DNA replication. CDK2 activity is tightly controlled by cyclin binding, phosphorylation, and interaction with CDK inhibitors (e.g., p21, p27). Dysregulation of CDK2 is implicated in various cancers and developmental disorders.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Breast cancer | Overexpression and amplification of CDK2 lead to uncontrolled cell proliferation | COSMIC, ClinVar |
| Ovarian cancer | CDK2 amplification and activating mutations promote tumorigenesis | COSMIC, ClinVar |
| Lung cancer | CDK2 overexpression correlates with poor prognosis and resistance to therapy | COSMIC, ClinVar |
| Melanoma | CDK2 mutations and copy number gains drive cell cycle progression | COSMIC, ClinVar |
| Colorectal cancer | CDK2 upregulation contributes to genomic instability | COSMIC, ClinVar |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Testis | 42.3 | High |
| Bone marrow | 28.1 | High |
| Lymph node | 22.5 | High |
| Colon | 15.8 | Medium |
| Lung | 12.4 | Medium |
| Brain | 6.7 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa (cervical cancer) | 35.2 | High expression |
| A549 (lung cancer) | 28.9 | High expression |
| MCF7 (breast cancer) | 22.1 | Medium expression |
| HEK293 (embryonic kidney) | 18.4 | Medium expression |
| K562 (leukemia) | 15.3 | Medium expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1A>G (p.Met1?) | Missense | Rare | Loss of start codon, likely loss of function |
| c.47C>T (p.Ala16Val) | Missense | 0.01% | Reduced kinase activity |
| c.103G>A (p.Glu35Lys) | Missense | 0.02% | Altered cyclin binding |
| c.364C>T (p.Arg122Trp) | Missense | 0.005% | Impaired substrate phosphorylation |
| c.794A>G (p.Asn265Ser) | Missense | 0.01% | Gain of function in some cancers |
Mutation functional classification
Loss of Function (LOF)
Mutations affecting the ATP-binding pocket or catalytic residues (e.g., p.Asp145Asn) reduce kinase activity, impairing cell cycle progression.
Gain of Function (GOF)
Activating mutations (e.g., p.Asn265Ser) enhance CDK2 activity, promoting uncontrolled proliferation in cancer.
Dominant Negative (DN)
Mutants that bind cyclins but lack kinase activity (e.g., p.Asp145Asn) can sequester cyclins and inhibit wild-type CDK2 function.
View complete mutation data:
Gene Ontology (GO)
| • GO:0004693 - cyclin-dependent protein serine/threonine kinase activity | • GO:0007049 - cell cycle |
| • GO:0051726 - regulation of cell cycle | • GO:0000082 - G1/S transition of mitotic cell cycle |
| • GO:0005634 - nucleus | • GO:0005737 - cytoplasm |
Pathways
• Cell Cycle (KEGG: hsa04110)
• p53 signaling pathway (KEGG: hsa04115)
• Cellular Senescence (KEGG: hsa04218)
• FoxO signaling pathway (KEGG: hsa04068)
Protein Summary
CDK2 is a 298-amino acid serine/threonine kinase (33 kDa) with a typical kinase domain. It is activated by binding to cyclin E or cyclin A and by phosphorylation at Thr160 by CAK (CDK-activating kinase). The active CDK2-cyclin complex phosphorylates substrates including RB1, p107, p130, and CDC25A to drive G1/S transition and S phase progression. CDK2 is negatively regulated by CDK inhibitors p21 (CDKN1A) and p27 (CDKN1B). Structural studies reveal a bilobal kinase fold with an N-terminal lobe (β-sheet) and a C-terminal lobe (α-helical), with the active site cleft between them.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CDK2 Knockout HEK293 Cell Line | EDC07797 | Human | 1017 | Details Get a Quote |
| CDK2AP1 Knockout HEK293 Cell Line | EDJ-KQ2448 | Human | 8099 | Details Get a Quote |
| CDK2AP2 Knockout HEK293 Cell Line | EDJ-KQ6980 | Human | 10263 | Details Get a Quote |
| CDK20 Knockout HEK293 Cell Line | EDJ-KQ8070 | Human | 23552 | Details Get a Quote |
| CDK2AP1 Knockout A-549 Cell Line | EDJ-KQ22971 | Human | 8099 | Details Get a Quote |
| CDK2AP1 Knockout HCT 116 Cell Line | EDJ-KQ22972 | Human | 8099 | Details Get a Quote |
| CDK2AP1 Knockout HeLa Cell Line | EDJ-KQ22973 | Human | 8099 | Details Get a Quote |
| CDK2AP2 Knockout A-549 Cell Line | EDJ-KQ31681 | Human | 10263 | Details Get a Quote |
| CDK2AP2 Knockout HCT 116 Cell Line | EDJ-KQ31682 | Human | 10263 | Details Get a Quote |
| CDK2AP2 Knockout HeLa Cell Line | EDJ-KQ31683 | Human | 10263 | Details Get a Quote |
| CDK20 Knockout A-549 Cell Line | EDJ-KQ32559 | Human | 23552 | Details Get a Quote |
| CDK20 Knockout HCT 116 Cell Line | EDJ-KQ33900 | Human | 23552 | Details Get a Quote |
| CDK20 Knockout HeLa Cell Line | EDJ-KQ33901 | Human | 23552 | Details Get a Quote |
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