CDH23 Gene: Cadherin Related 23

Key Gene in Hearing and Vision; Associated with Usher Syndrome and Age-Related Hearing Loss

Gene Information Card

Symbol CDH23
Full Name Cadherin Related 23
Gene Type Protein coding
Chromosomal Location 10q22.1
NCBI Gene ID 64072 ncbi.nlm.nih.gov/gene/64072
Ensembl ID ENSG00000107736
UniProt ID Q9H251
OMIM ID 605516
HGNC ID 13733
Aliases USH1H, DFNB12, DFNA12, CDHR23, KIAA1774

Description

The CDH23 gene encodes cadherin 23, a member of the cadherin superfamily of calcium-dependent cell adhesion proteins. Cadherin 23 is essential for the formation and maintenance of hair cell stereocilia bundles in the inner ear and for photoreceptor cell function in the retina. Mutations in CDH23 cause Usher syndrome type 1D (USH1D), characterized by congenital profound hearing loss, vestibular dysfunction, and retinitis pigmentosa, as well as non-syndromic autosomal recessive deafness (DFNB12) and autosomal dominant deafness (DFNA12). The protein contains multiple extracellular cadherin repeats, a transmembrane domain, and a cytoplasmic tail that interacts with other Usher syndrome proteins.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Usher syndrome type 1D (USH1D) Loss of cadherin 23 function disrupts stereocilia bundle cohesion and photoreceptor cell integrity, leading to combined hearing and vision loss. ClinVar, OMIM
Non-syndromic autosomal recessive deafness 12 (DFNB12) Missense mutations in CDH23 impair but do not abolish protein function, causing isolated hearing loss without retinal degeneration. ClinVar, OMIM
Non-syndromic autosomal dominant deafness 12 (DFNA12) Dominant mutations in CDH23 alter cadherin 23 structure, leading to progressive hearing loss. ClinVar, OMIM
Age-related hearing loss (ARHL) Common variants in CDH23 increase susceptibility to presbycusis by affecting hair cell maintenance. NCBI Gene, ClinVar

Expression Profile

Tissue Expression
Tissue nTPM level
Inner ear (cochlea) High
Retina High
Testis Moderate
Brain Low
Lung Low
Cell Line Expression
Cell Line nTPM Notes
Hair cells (inner ear) High expression; essential for stereocilia
Retinal photoreceptor cells High expression; involved in calyceal processes
HEK293 Low endogenous expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.5237G>A (p.Arg1746Gln) Missense Common in DFNB12 Reduced protein stability; partial loss of function
c.719C>T (p.Pro240Leu) Missense Found in DFNA12 Dominant negative effect on cadherin 23
c.9565C>T (p.Arg3189*) Nonsense Rare in USH1D Complete loss of function; truncation
c.3343delG (p.Ala1115Profs*13) Frameshift Rare in USH1D Loss of function; premature stop
Mutation functional classification

Loss of Function (LOF)

Nonsense, frameshift, and splice-site mutations that lead to truncated or absent cadherin 23 protein, causing Usher syndrome type 1D.

Gain of Function (GOF)

Not reported for CDH23.

Dominant Negative (DN)

Certain missense mutations (e.g., p.Pro240Leu) in DFNA12 interfere with wild-type cadherin 23 function, disrupting stereocilia bundle integrity.

Pathways

Usher syndrome interactome (cadherin 23
harmonin
sans
etc.)
Stereocilia bundle assembly and maintenance
Photoreceptor cell calyceal process formation

Protein Summary

Cadherin 23 is a large, single-pass transmembrane protein with 27 extracellular cadherin repeats, a transmembrane domain, and a cytoplasmic region containing a PDZ-binding motif. It forms calcium-dependent homophilic interactions and interacts with other Usher syndrome proteins (e.g., harmonin, sans) to link stereocilia together and to the actin cytoskeleton. In the retina, it localizes to the calyceal processes of photoreceptor cells. The protein is critical for mechanotransduction in hair cells and for photoreceptor survival.

Related Products

Product name Cat.No. Species Gene ID
CDH23 Knockout HEK293 Cell Line EDJ-KQ12839 Human 64072 Details Get a Quote
CDH23 Knockout A-549 Cell Line EDJ-KQ41988 Human 64072 Details Get a Quote
CDH23 Knockout HeLa Cell Line EDJ-KQ57015 Human 64072 Details Get a Quote
CDH23 Knockout HCT 116 Cell Line EDJ-KQ73956 Human 64072 Details Get a Quote
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