CDH23 Gene: Cadherin Related 23
Key Gene in Hearing and Vision; Associated with Usher Syndrome and Age-Related Hearing Loss
Gene Information Card
| Symbol | CDH23 |
|---|---|
| Full Name | Cadherin Related 23 |
| Gene Type | Protein coding |
| Chromosomal Location | 10q22.1 |
| NCBI Gene ID | 64072 ncbi.nlm.nih.gov/gene/64072 |
| Ensembl ID | ENSG00000107736 |
| UniProt ID | Q9H251 |
| OMIM ID | 605516 |
| HGNC ID | 13733 |
| Aliases | USH1H, DFNB12, DFNA12, CDHR23, KIAA1774 |
Description
The CDH23 gene encodes cadherin 23, a member of the cadherin superfamily of calcium-dependent cell adhesion proteins. Cadherin 23 is essential for the formation and maintenance of hair cell stereocilia bundles in the inner ear and for photoreceptor cell function in the retina. Mutations in CDH23 cause Usher syndrome type 1D (USH1D), characterized by congenital profound hearing loss, vestibular dysfunction, and retinitis pigmentosa, as well as non-syndromic autosomal recessive deafness (DFNB12) and autosomal dominant deafness (DFNA12). The protein contains multiple extracellular cadherin repeats, a transmembrane domain, and a cytoplasmic tail that interacts with other Usher syndrome proteins.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Usher syndrome type 1D (USH1D) | Loss of cadherin 23 function disrupts stereocilia bundle cohesion and photoreceptor cell integrity, leading to combined hearing and vision loss. | ClinVar, OMIM |
| Non-syndromic autosomal recessive deafness 12 (DFNB12) | Missense mutations in CDH23 impair but do not abolish protein function, causing isolated hearing loss without retinal degeneration. | ClinVar, OMIM |
| Non-syndromic autosomal dominant deafness 12 (DFNA12) | Dominant mutations in CDH23 alter cadherin 23 structure, leading to progressive hearing loss. | ClinVar, OMIM |
| Age-related hearing loss (ARHL) | Common variants in CDH23 increase susceptibility to presbycusis by affecting hair cell maintenance. | NCBI Gene, ClinVar |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Inner ear (cochlea) | — | High |
| Retina | — | High |
| Testis | — | Moderate |
| Brain | — | Low |
| Lung | — | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Hair cells (inner ear) | — | High expression; essential for stereocilia |
| Retinal photoreceptor cells | — | High expression; involved in calyceal processes |
| HEK293 | — | Low endogenous expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.5237G>A (p.Arg1746Gln) | Missense | Common in DFNB12 | Reduced protein stability; partial loss of function |
| c.719C>T (p.Pro240Leu) | Missense | Found in DFNA12 | Dominant negative effect on cadherin 23 |
| c.9565C>T (p.Arg3189*) | Nonsense | Rare in USH1D | Complete loss of function; truncation |
| c.3343delG (p.Ala1115Profs*13) | Frameshift | Rare in USH1D | Loss of function; premature stop |
Mutation functional classification
Loss of Function (LOF)
Nonsense, frameshift, and splice-site mutations that lead to truncated or absent cadherin 23 protein, causing Usher syndrome type 1D.
Gain of Function (GOF)
Not reported for CDH23.
Dominant Negative (DN)
Certain missense mutations (e.g., p.Pro240Leu) in DFNA12 interfere with wild-type cadherin 23 function, disrupting stereocilia bundle integrity.
View complete mutation data:
Gene Ontology (GO)
| • homophilic cell adhesion via plasma membrane adhesion molecules (GO:0007156) | • calcium ion binding (GO:0005509) |
| • adherens junction (GO:0005912) | • sensory perception of sound (GO:0007605) |
| • visual perception (GO:0007601) | • stereocilium (GO:0032420) |
| • integral component of membrane (GO:0016021) |
Pathways
• Usher syndrome interactome (cadherin 23
• harmonin
• sans
• etc.)
• Stereocilia bundle assembly and maintenance
• Photoreceptor cell calyceal process formation
Protein Summary
Cadherin 23 is a large, single-pass transmembrane protein with 27 extracellular cadherin repeats, a transmembrane domain, and a cytoplasmic region containing a PDZ-binding motif. It forms calcium-dependent homophilic interactions and interacts with other Usher syndrome proteins (e.g., harmonin, sans) to link stereocilia together and to the actin cytoskeleton. In the retina, it localizes to the calyceal processes of photoreceptor cells. The protein is critical for mechanotransduction in hair cells and for photoreceptor survival.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CDH23 Knockout HEK293 Cell Line | EDJ-KQ12839 | Human | 64072 | Details Get a Quote |
| CDH23 Knockout A-549 Cell Line | EDJ-KQ41988 | Human | 64072 | Details Get a Quote |
| CDH23 Knockout HeLa Cell Line | EDJ-KQ57015 | Human | 64072 | Details Get a Quote |
| CDH23 Knockout HCT 116 Cell Line | EDJ-KQ73956 | Human | 64072 | Details Get a Quote |
Displaying Records 1 To 4 Of 4 Records