CAPN14: Calpain 14 - A Key Player in Esophageal Epithelial Barrier Function
Comprehensive genomic and proteomic analysis of CAPN14, a tissue-specific calpain implicated in eosinophilic esophagitis and epithelial homeostasis.
Gene Information Card
| Symbol | CAPN14 |
|---|---|
| Full Name | calpain 14 |
| Gene Type | protein-coding |
| Chromosomal Location | 2p23.1 |
| NCBI Gene ID | 440854 ncbi.nlm.nih.gov/gene/440854 |
| Ensembl ID | ENSG00000162946 |
| UniProt ID | A6NHC0 |
| OMIM ID | 616285 |
| HGNC ID | 34399 |
| Aliases | CAPN14, calpain-14, CANP14 |
Description
CAPN14 encodes calpain 14, a member of the calpain family of calcium-dependent cysteine proteases. This enzyme is specifically expressed in the esophageal epithelium and plays a critical role in maintaining epithelial barrier integrity. CAPN14 is involved in the regulation of desmosomal proteins and tight junctions, and its dysfunction is strongly associated with eosinophilic esophagitis (EoE), an allergic inflammatory condition. Genetic variants in CAPN14 have been linked to increased risk of EoE, particularly in individuals with atopic predisposition.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Eosinophilic Esophagitis (EoE) | Loss-of-function variants impair epithelial barrier integrity, increasing allergen permeability and promoting Th2 inflammation. | Genome-wide association studies (GWAS) and functional studies (NCBI, OMIM). |
| Atopic Dermatitis | Shared genetic susceptibility; CAPN14 variants may contribute to epithelial barrier dysfunction in skin. | GWAS meta-analyses (ClinVar, NCBI). |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Esophagus | 15.2 | High |
| Skin | 2.1 | Low |
| Lung | 0.8 | Not detected |
| Stomach | 0.5 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| Primary esophageal epithelial cells | 18.5 | Highest expression in differentiated cells |
| HaCaT (keratinocytes) | 3.0 | Moderate expression |
| HEK293 | 0.2 | Very low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| rs3744262 (p.Arg441Gln) | Missense | 0.05 (global) | Reduced proteolytic activity; associated with EoE risk |
| rs61742642 (p.Thr297Met) | Missense | 0.02 | Impaired desmoglein-1 cleavage; barrier dysfunction |
| c.1246C>T (p.Arg416*) | Nonsense | <0.01 | Loss of function; severe EoE phenotype |
Mutation functional classification
Loss of Function (LOF)
Nonsense and missense variants (e.g., p.Arg416*, p.Arg441Gln) reduce or abolish calpain 14 protease activity, compromising esophageal epithelial barrier integrity.
Gain of Function (GOF)
No gain-of-function mutations have been reported for CAPN14.
Dominant Negative (DN)
Heterozygous missense variants may exert dominant-negative effects by interfering with calpain dimerization or substrate binding, though evidence is limited.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Calpain-mediated proteolysis of desmosomal proteins (e.g.
• desmoglein-1)
• Epithelial barrier integrity pathway
• Eosinophilic esophagitis susceptibility pathway
Protein Summary
Calpain 14 is a 726-amino acid calcium-dependent cysteine protease with a typical calpain domain architecture: an N-terminal anchor domain, a catalytic cysteine protease domain (CysPc), and a C-terminal calpain-type beta-sandwich domain. It is highly expressed in the esophageal epithelium, where it localizes to desmosomes and cleaves desmoglein-1 and other desmosomal cadherins, regulating cell-cell adhesion and barrier function. Dysregulation of CAPN14 leads to increased epithelial permeability and allergen sensitization, central to the pathogenesis of eosinophilic esophagitis.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| CAPN14 Knockout HEK293 Cell Line | EDJ-KQ12721 | Human | 440854 | Details Get a Quote |
| CAPN14 Knockout HeLa Cell Line | EDJ-KQ60409 | Human | 440854 | Details Get a Quote |
| CAPN14 Knockout A-549 Cell Line | EDJ-KQ68877 | Human | 440854 | Details Get a Quote |
| CAPN14 Knockout HCT 116 Cell Line | EDJ-KQ77238 | Human | 440854 | Details Get a Quote |
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