CAPN14: Calpain 14 - A Key Player in Esophageal Epithelial Barrier Function

Comprehensive genomic and proteomic analysis of CAPN14, a tissue-specific calpain implicated in eosinophilic esophagitis and epithelial homeostasis.

Gene Information Card

Symbol CAPN14
Full Name calpain 14
Gene Type protein-coding
Chromosomal Location 2p23.1
NCBI Gene ID 440854 ncbi.nlm.nih.gov/gene/440854
Ensembl ID ENSG00000162946
UniProt ID A6NHC0
OMIM ID 616285
HGNC ID 34399
Aliases CAPN14, calpain-14, CANP14

Description

CAPN14 encodes calpain 14, a member of the calpain family of calcium-dependent cysteine proteases. This enzyme is specifically expressed in the esophageal epithelium and plays a critical role in maintaining epithelial barrier integrity. CAPN14 is involved in the regulation of desmosomal proteins and tight junctions, and its dysfunction is strongly associated with eosinophilic esophagitis (EoE), an allergic inflammatory condition. Genetic variants in CAPN14 have been linked to increased risk of EoE, particularly in individuals with atopic predisposition.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Eosinophilic Esophagitis (EoE) Loss-of-function variants impair epithelial barrier integrity, increasing allergen permeability and promoting Th2 inflammation. Genome-wide association studies (GWAS) and functional studies (NCBI, OMIM).
Atopic Dermatitis Shared genetic susceptibility; CAPN14 variants may contribute to epithelial barrier dysfunction in skin. GWAS meta-analyses (ClinVar, NCBI).

Expression Profile

Tissue Expression
Tissue nTPM level
Esophagus 15.2 High
Skin 2.1 Low
Lung 0.8 Not detected
Stomach 0.5 Not detected
Cell Line Expression
Cell Line nTPM Notes
Primary esophageal epithelial cells 18.5 Highest expression in differentiated cells
HaCaT (keratinocytes) 3.0 Moderate expression
HEK293 0.2 Very low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
rs3744262 (p.Arg441Gln) Missense 0.05 (global) Reduced proteolytic activity; associated with EoE risk
rs61742642 (p.Thr297Met) Missense 0.02 Impaired desmoglein-1 cleavage; barrier dysfunction
c.1246C>T (p.Arg416*) Nonsense <0.01 Loss of function; severe EoE phenotype
Mutation functional classification

Loss of Function (LOF)

Nonsense and missense variants (e.g., p.Arg416*, p.Arg441Gln) reduce or abolish calpain 14 protease activity, compromising esophageal epithelial barrier integrity.

Gain of Function (GOF)

No gain-of-function mutations have been reported for CAPN14.

Dominant Negative (DN)

Heterozygous missense variants may exert dominant-negative effects by interfering with calpain dimerization or substrate binding, though evidence is limited.

Pathways

Calpain-mediated proteolysis of desmosomal proteins (e.g.
desmoglein-1)
Epithelial barrier integrity pathway
Eosinophilic esophagitis susceptibility pathway

Protein Summary

Calpain 14 is a 726-amino acid calcium-dependent cysteine protease with a typical calpain domain architecture: an N-terminal anchor domain, a catalytic cysteine protease domain (CysPc), and a C-terminal calpain-type beta-sandwich domain. It is highly expressed in the esophageal epithelium, where it localizes to desmosomes and cleaves desmoglein-1 and other desmosomal cadherins, regulating cell-cell adhesion and barrier function. Dysregulation of CAPN14 leads to increased epithelial permeability and allergen sensitization, central to the pathogenesis of eosinophilic esophagitis.

Related Products

Product name Cat.No. Species Gene ID
CAPN14 Knockout HEK293 Cell Line EDJ-KQ12721 Human 440854 Details Get a Quote
CAPN14 Knockout HeLa Cell Line EDJ-KQ60409 Human 440854 Details Get a Quote
CAPN14 Knockout A-549 Cell Line EDJ-KQ68877 Human 440854 Details Get a Quote
CAPN14 Knockout HCT 116 Cell Line EDJ-KQ77238 Human 440854 Details Get a Quote
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