C3 (Complement C3)

Central component of the complement system; key mediator of innate immunity and inflammation

Gene Information Card

Symbol C3
Full Name Complement C3
Gene Type protein-coding
Chromosomal Location 19p13.3
NCBI Gene ID 718 ncbi.nlm.nih.gov/gene/718
Ensembl ID ENSG00000125730
UniProt ID P01024
OMIM ID 120700
HGNC ID 1318
Aliases AHUS5, ARMD9, C3a, C3b, CPAMD1, HEL-S-62p

Description

The C3 gene encodes complement component 3, a central protein of the complement system. C3 is synthesized primarily by the liver and plays a critical role in innate immunity by opsonizing pathogens, promoting inflammation, and forming the membrane attack complex. Proteolytic cleavage generates active fragments C3a (anaphylatoxin) and C3b (opsonin). Mutations in C3 are associated with atypical hemolytic uremic syndrome, age-related macular degeneration, and C3 glomerulopathy.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Atypical hemolytic uremic syndrome (aHUS) Loss-of-function or gain-of-function mutations in C3 lead to dysregulated complement activation, causing endothelial damage and microvascular thrombosis. ClinVar; OMIM #612925
Age-related macular degeneration (AMD) Common variants (e.g., rs2230199, R102G) alter C3 function, increasing complement deposition in the retina. OMIM #603075; NCBI Gene
C3 glomerulopathy (C3G) Deficiency or mutations in C3 result in uncontrolled alternative pathway activation and glomerular deposition of C3 fragments. OMIM #613779; ClinVar
Complement C3 deficiency Biallelic loss-of-function mutations cause recurrent bacterial infections and immune complex disease. OMIM #120700; ClinVar

Expression Profile

Tissue Expression
Tissue nTPM level
Liver 68.2 High
Adipose tissue 12.5 Medium
Lung 8.3 Medium
Kidney 6.1 Low
Brain 1.2 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 (liver) 45.3 High expression
A549 (lung) 9.8 Moderate expression
HEK293 (kidney) 5.4 Low expression
THP-1 (monocyte) 3.1 Low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.304C>T (p.Arg102Gly) SNV Common (allele frequency ~0.2 in Europeans) Alters C3 function; risk factor for AMD
c.481C>T (p.Arg161Trp) SNV Rare Associated with aHUS; impaired regulation
c.2230G>A (p.Gly744Arg) SNV Rare Associated with C3 glomerulopathy; gain of function
c.3700G>A (p.Glu1234Lys) SNV Rare Associated with aHUS; loss of regulation
Mutation functional classification

Loss of Function (LOF)

Biallelic loss-of-function mutations (e.g., nonsense, frameshift) cause complete C3 deficiency, leading to recurrent infections.

Gain of Function (GOF)

Missense mutations such as p.Gly744Arg enhance C3 convertase activity, predisposing to C3 glomerulopathy.

Dominant Negative (DN)

Some missense variants (e.g., p.Arg161Trp) may act as dominant negatives by impairing C3b inactivation, contributing to aHUS.

Pathways

Complement cascade (Reactome: R-HSA-166658)
Alternative complement activation (Reactome: R-HSA-173736)
Classical antibody-mediated complement activation (Reactome: R-HSA-173623)
Lectin pathway of complement activation (Reactome: R-HSA-166662)
Immune system (KEGG: hsa04610)

Protein Summary

Complement C3 is a 1663-amino-acid glycoprotein (185 kDa) synthesized as a single-chain precursor, then proteolytically processed into alpha and beta chains linked by disulfide bonds. It is the most abundant complement protein in serum (~1.3 mg/mL). C3 is cleaved by C3 convertase into C3a (anaphylatoxin) and C3b (opsonin). C3b covalently attaches to pathogen surfaces, marking them for phagocytosis, and initiates the formation of the membrane attack complex. C3a promotes inflammation via chemotaxis and mast cell degranulation. Regulation by factors H and I prevents excessive activation. Mutations disrupting regulation lead to renal and retinal diseases.

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