BCAN Gene - Brevican
BCAN (Brevican) is a gene encoding a chondroitin sulfate proteoglycan of the brain extracellular matrix, involved in neural development and synaptic plasticity.
Gene Information Card
| Symbol | BCAN |
|---|---|
| Full Name | Brevican |
| Gene Type | Protein coding |
| Chromosomal Location | 1q23.1 |
| NCBI Gene ID | 63827 ncbi.nlm.nih.gov/gene/63827 |
| Ensembl ID | ENSG00000132692 |
| UniProt ID | Q96GW7 |
| OMIM ID | 600347 |
| HGNC ID | 23059 |
| Aliases | BEHAB, CSPG7, MGC57472 |
Description
BCAN (brevican) is a member of the lectican family of chondroitin sulfate proteoglycans. It is predominantly expressed in the central nervous system, where it is a major component of the perineuronal nets and the extracellular matrix. Brevican plays critical roles in neural cell adhesion, neurite outgrowth, synaptic plasticity, and glial scar formation. Alternative splicing generates multiple isoforms. Dysregulation of BCAN expression is implicated in glioma invasion and other neurological disorders.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Glioma | Overexpression of BCAN promotes tumor cell invasion and migration through interaction with hyaluronan and CD44. | COSMIC, PubMed (PMID: 15607980) |
| Glioblastoma multiforme | Elevated BCAN expression correlates with poor prognosis and increased invasiveness. | COSMIC, PubMed (PMID: 21502545) |
| Alzheimer disease | Altered brevican levels in cerebrospinal fluid and brain tissue suggest involvement in amyloid plaque pathology. | PubMed (PMID: 25655837) |
| Schizophrenia | Genome-wide association studies implicate BCAN variants in risk for schizophrenia. | ClinVar, PubMed (PMID: 25056061) |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 38.2 | High |
| Spinal cord | 22.5 | Medium |
| Testis | 1.8 | Low |
| Heart | 0.5 | Not detected |
| Liver | 0.2 | Not detected |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| U-87 MG (glioblastoma) | 45.1 | High expression |
| SH-SY5Y (neuroblastoma) | 12.3 | Moderate expression |
| HEK 293 (embryonic kidney) | 0.8 | Low expression |
| HeLa (cervical carcinoma) | 0.3 | Not detected |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.1234C>T (p.Arg412Cys) | Missense | <0.01% | Unknown; predicted damaging by SIFT |
| c.567_568insA (p.Glu190Argfs*12) | Frameshift | <0.01% | Loss of function |
| c.890G>A (p.Arg297His) | Missense | 0.02% | Possibly benign |
Mutation functional classification
Loss of Function (LOF)
Frameshift and nonsense mutations predicted to cause haploinsufficiency or loss of protein function.
Gain of Function (GOF)
Not reported in literature.
Dominant Negative (DN)
Not reported.
View complete mutation data:
Gene Ontology (GO)
| • extracellular region (GO:0005576) | • external encapsulating structure (GO:0030312) |
| • cell adhesion (GO:0007155) | • nervous system development (GO:0007399) |
| • extracellular matrix organization (GO:0030198) | • hyaluronic acid binding (GO:0005540) |
| • chloride ion binding (GO:0031404) |
Pathways
• Extracellular matrix organization (Reactome: R-HSA-1474244)
• Hyaluronan metabolism (Reactome: R-HSA-216083)
• Aggrecan and brevican degradation (Reactome: R-HSA-216091)
Protein Summary
Brevican is a 911-amino acid chondroitin sulfate proteoglycan with a molecular weight of approximately 100 kDa (core protein). It contains an N-terminal hyaluronan-binding domain, a central mucin-like region, and a C-terminal lectin-like domain. Brevican is anchored to the cell surface via a glycosylphosphatidylinositol (GPI) linkage or secreted into the extracellular matrix. It interacts with hyaluronan, tenascin-R, and other matrix components to stabilize perineuronal nets. In gliomas, brevican promotes tumor cell invasion by modulating cell-matrix interactions.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| BCAN Knockout HEK293 Cell Line | EDJ-KQ12521 | Human | 63827 | Details Get a Quote |
| BCAN Knockout HeLa Cell Line | EDJ-KQ56991 | Human | 63827 | Details Get a Quote |
| BCAN Knockout A-549 Cell Line | EDJ-KQ65494 | Human | 63827 | Details Get a Quote |
| BCAN Knockout HCT 116 Cell Line | EDJ-KQ73931 | Human | 63827 | Details Get a Quote |
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