B3GALNT1: Beta-1,3-N-Acetylgalactosaminyltransferase 1 (Globoside/Gb4 Synthase)

Key enzyme in glycosphingolipid biosynthesis, associated with hereditary spastic paraplegia and cancer progression.

Gene Information Card

Symbol B3GALNT1
Full Name Beta-1,3-N-Acetylgalactosaminyltransferase 1 (Globoside/Gb4 Synthase)
Gene Type Protein coding
Chromosomal Location 3q25.31
NCBI Gene ID 8706 ncbi.nlm.nih.gov/gene/8706
Ensembl ID ENSG00000169245
UniProt ID Q9Y2B3
OMIM ID 603094
HGNC ID 918
Aliases B3GALT1, Gb4S, GALNT1, beta3Gal-T1, beta3GalNAcT1

Description

B3GALNT1 encodes beta-1,3-N-acetylgalactosaminyltransferase 1, a Golgi enzyme that catalyzes the transfer of N-acetylgalactosamine (GalNAc) to globotriaosylceramide (Gb3) to form globoside (Gb4), a key step in globo-series glycosphingolipid biosynthesis. The enzyme is essential for the synthesis of P blood group antigens and plays roles in cell adhesion, signaling, and cancer progression. Mutations in B3GALNT1 cause autosomal recessive hereditary spastic paraplegia type 26 (SPG26).

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Hereditary Spastic Paraplegia 26 (SPG26) Loss-of-function mutations impair Gb4 synthesis, leading to axonal degeneration and motor neuron dysfunction. ClinVar, OMIM
P Blood Group System (P1/P2/Pk phenotypes) Deficiency in B3GALNT1 activity alters globoside expression, affecting P antigen typing. OMIM, UniProt
Breast Cancer Overexpression of B3GALNT1 and Gb4 correlates with tumor progression and poor prognosis. COSMIC, PubMed
Colorectal Cancer Altered glycosphingolipid profiles (Gb4 accumulation) linked to metastasis and chemoresistance. COSMIC, PubMed

Expression Profile

Tissue Expression
Tissue nTPM level
Kidney 12.5 Medium
Liver 8.3 Medium
Brain 6.1 Low
Heart 4.8 Low
Lung 3.2 Low
Colon 2.9 Low
Cell Line Expression
Cell Line nTPM Notes
HEK293 15.2 High expression
MCF7 (breast cancer) 9.8 Moderate expression
HepG2 (liver cancer) 7.4 Moderate expression
A549 (lung cancer) 4.1 Low expression
K562 (leukemia) 2.3 Very low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.632C>T (p.Thr211Met) Missense Rare Loss of enzyme activity; associated with SPG26
c.1A>G (p.Met1Val) Start loss Rare Complete loss of protein; pathogenic in SPG26
c.820_821delAG (p.Arg274Glufs*12) Frameshift Rare Truncated protein; loss of function
c.1039C>T (p.Arg347*) Nonsense Rare Premature stop; loss of function
Mutation functional classification

Loss of Function (LOF)

Most B3GALNT1 mutations (missense, nonsense, frameshift) result in loss of enzymatic activity, leading to Gb4 deficiency and hereditary spastic paraplegia SPG26.

Gain of Function (GOF)

No gain-of-function mutations reported in B3GALNT1.

Dominant Negative (DN)

No dominant-negative mutations reported; inheritance is autosomal recessive.

Pathways

• Glycosphingolipid biosynthesis - globo series (KEGG: hsa00603)
• Metabolism of glycosphingolipids (Reactome: R-HSA-1660661)

Protein Summary

B3GALNT1 is a type II transmembrane glycoprotein localized to the Golgi apparatus. It contains a short N-terminal cytoplasmic tail, a transmembrane domain, and a large C-terminal catalytic domain facing the Golgi lumen. The enzyme specifically transfers GalNAc from UDP-GalNAc to Gb3 (globotriaosylceramide) to form Gb4 (globoside). This reaction is critical for the biosynthesis of globo-series glycosphingolipids, which are components of cell membranes involved in cell-cell recognition, adhesion, and signaling. Loss of function leads to accumulation of Gb3 and deficiency of Gb4, causing neurological degeneration in SPG26. In cancer, altered expression of B3GALNT1 modulates tumor cell glycosylation, impacting metastasis and immune evasion.

Related Products

Product name Cat.No. Species Gene ID
B3GALNT1 Knockout HEK293 Cell Line EDJ-KQ6330 Human 8706 Details Get a Quote
B3GALNT1 Knockout HCT 116 Cell Line EDJ-KQ28957 Human 8706 Details Get a Quote
B3GALNT1 Knockout HeLa Cell Line EDJ-KQ30269 Human 8706 Details Get a Quote
B3GALNT1 Knockout A-549 Cell Line EDJ-KQ63468 Human 8706 Details Get a Quote
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