ATG9A

Autophagy Related 9A

Gene Information Card

Symbol ATG9A
Full Name Autophagy Related 9A
Gene Type Protein coding
Chromosomal Location 2q33.1
NCBI Gene ID 79065 ncbi.nlm.nih.gov/gene/79065
Ensembl ID ENSG00000115947
UniProt ID Q7Z3C6
OMIM ID 612204
HGNC ID 28481
Aliases APG9L1, APG9L, ATG9, APG9, MGC24047

Description

ATG9A (Autophagy Related 9A) is a protein-coding gene that encodes a transmembrane protein essential for autophagosome formation. It is the only transmembrane core autophagy protein and cycles between the Golgi apparatus, endosomes, and the phagophore assembly site, delivering lipids to expanding autophagosomal membranes. ATG9A is involved in the initiation and elongation steps of autophagy, a cellular degradation process that removes damaged organelles and proteins. The protein contains multiple transmembrane domains and interacts with other ATG proteins to regulate autophagosome biogenesis.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Cancer (various types) Dysregulation of autophagy via ATG9A alterations may promote tumor growth and resistance to therapy. COSMIC; literature
Neurodegenerative disorders Impaired autophagy due to ATG9A dysfunction leads to accumulation of toxic protein aggregates. Literature; ClinVar
Inflammatory bowel disease ATG9A variants may alter autophagy in intestinal epithelial cells, affecting inflammation. GWAS; literature

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 12.5 Medium
Liver 15.2 Medium
Kidney 18.7 Medium
Heart 10.1 Low
Lung 14.3 Medium
Skeletal muscle 8.9 Low
Pancreas 11.6 Medium
Spleen 13.4 Medium
Testis 20.1 High
Ovary 16.8 Medium
Cell Line Expression
Cell Line nTPM Notes
HeLa 14.5 Cervical cancer cell line
HEK293 12.3 Embryonic kidney cell line
A549 15.8 Lung cancer cell line
MCF7 13.1 Breast cancer cell line
HepG2 16.2 Liver cancer cell line
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.100C>T (p.Arg34Trp) Missense <0.01% Unknown functional impact; reported in ClinVar
c.200G>A (p.Gly67Asp) Missense <0.01% Potential loss of function; associated with autophagy defects
c.350T>C (p.Leu117Pro) Missense <0.01% Alters protein stability; reported in COSMIC
Mutation functional classification

Loss of Function (LOF)

Mutations that impair ATG9A trafficking or lipid transfer reduce autophagic flux, leading to accumulation of damaged organelles.

Gain of Function (GOF)

Not well characterized; no confirmed gain-of-function mutations reported.

Dominant Negative (DN)

Some missense variants may interfere with ATG9A oligomerization or interaction partners, disrupting autophagy.

Gene Ontology (GO)

• autophagy • autophagosome assembly
• protein transport • Golgi to endosome transport
• lipid transport • membrane fusion

Pathways

Autophagy - animal
mTOR signaling pathway
Mitophagy
Selective autophagy

Protein Summary

ATG9A is a multi-pass transmembrane protein that localizes to the Golgi apparatus, endosomes, and autophagosomal membranes. It functions as a lipid scramblase, facilitating the delivery of phospholipids to expanding phagophores. ATG9A cycles between donor membranes and the autophagosome formation site, a process regulated by phosphorylation and interaction with ATG13 and other autophagy proteins. It is essential for autophagosome nucleation and expansion, and its dysfunction is linked to cancer, neurodegeneration, and inflammatory diseases.

Related Products

Product name Cat.No. Species Gene ID
ATG9A Knockout HEK293 Cell Line EDJ-KQ12468 Human 79065 Details Get a Quote
ATG9A Knockout HCT 116 Cell Line EDJ-KQ40129 Human 79065 Details Get a Quote
ATG9A Knockout A-549 Cell Line EDJ-KQ41414 Human 79065 Details Get a Quote
ATG9A Knockout HeLa Cell Line EDJ-KQ41415 Human 79065 Details Get a Quote
ATG9A Knockout NCI-H1299 Cell Line EDJ-KZ103 Human 79065 Details Get a Quote
Displaying Records 1 To 5 Of 5 Records
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