ATG9A
Autophagy Related 9A
Gene Information Card
| Symbol | ATG9A |
|---|---|
| Full Name | Autophagy Related 9A |
| Gene Type | Protein coding |
| Chromosomal Location | 2q33.1 |
| NCBI Gene ID | 79065 ncbi.nlm.nih.gov/gene/79065 |
| Ensembl ID | ENSG00000115947 |
| UniProt ID | Q7Z3C6 |
| OMIM ID | 612204 |
| HGNC ID | 28481 |
| Aliases | APG9L1, APG9L, ATG9, APG9, MGC24047 |
Description
ATG9A (Autophagy Related 9A) is a protein-coding gene that encodes a transmembrane protein essential for autophagosome formation. It is the only transmembrane core autophagy protein and cycles between the Golgi apparatus, endosomes, and the phagophore assembly site, delivering lipids to expanding autophagosomal membranes. ATG9A is involved in the initiation and elongation steps of autophagy, a cellular degradation process that removes damaged organelles and proteins. The protein contains multiple transmembrane domains and interacts with other ATG proteins to regulate autophagosome biogenesis.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Cancer (various types) | Dysregulation of autophagy via ATG9A alterations may promote tumor growth and resistance to therapy. | COSMIC; literature |
| Neurodegenerative disorders | Impaired autophagy due to ATG9A dysfunction leads to accumulation of toxic protein aggregates. | Literature; ClinVar |
| Inflammatory bowel disease | ATG9A variants may alter autophagy in intestinal epithelial cells, affecting inflammation. | GWAS; literature |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Brain | 12.5 | Medium |
| Liver | 15.2 | Medium |
| Kidney | 18.7 | Medium |
| Heart | 10.1 | Low |
| Lung | 14.3 | Medium |
| Skeletal muscle | 8.9 | Low |
| Pancreas | 11.6 | Medium |
| Spleen | 13.4 | Medium |
| Testis | 20.1 | High |
| Ovary | 16.8 | Medium |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HeLa | 14.5 | Cervical cancer cell line |
| HEK293 | 12.3 | Embryonic kidney cell line |
| A549 | 15.8 | Lung cancer cell line |
| MCF7 | 13.1 | Breast cancer cell line |
| HepG2 | 16.2 | Liver cancer cell line |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.100C>T (p.Arg34Trp) | Missense | <0.01% | Unknown functional impact; reported in ClinVar |
| c.200G>A (p.Gly67Asp) | Missense | <0.01% | Potential loss of function; associated with autophagy defects |
| c.350T>C (p.Leu117Pro) | Missense | <0.01% | Alters protein stability; reported in COSMIC |
Mutation functional classification
Loss of Function (LOF)
Mutations that impair ATG9A trafficking or lipid transfer reduce autophagic flux, leading to accumulation of damaged organelles.
Gain of Function (GOF)
Not well characterized; no confirmed gain-of-function mutations reported.
Dominant Negative (DN)
Some missense variants may interfere with ATG9A oligomerization or interaction partners, disrupting autophagy.
View complete mutation data:
Gene Ontology (GO)
| • autophagy | • autophagosome assembly |
| • protein transport | • Golgi to endosome transport |
| • lipid transport | • membrane fusion |
Pathways
• Autophagy - animal
• mTOR signaling pathway
• Mitophagy
• Selective autophagy
Protein Summary
ATG9A is a multi-pass transmembrane protein that localizes to the Golgi apparatus, endosomes, and autophagosomal membranes. It functions as a lipid scramblase, facilitating the delivery of phospholipids to expanding phagophores. ATG9A cycles between donor membranes and the autophagosome formation site, a process regulated by phosphorylation and interaction with ATG13 and other autophagy proteins. It is essential for autophagosome nucleation and expansion, and its dysfunction is linked to cancer, neurodegeneration, and inflammatory diseases.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| ATG9A Knockout HEK293 Cell Line | EDJ-KQ12468 | Human | 79065 | Details Get a Quote |
| ATG9A Knockout HCT 116 Cell Line | EDJ-KQ40129 | Human | 79065 | Details Get a Quote |
| ATG9A Knockout A-549 Cell Line | EDJ-KQ41414 | Human | 79065 | Details Get a Quote |
| ATG9A Knockout HeLa Cell Line | EDJ-KQ41415 | Human | 79065 | Details Get a Quote |
| ATG9A Knockout NCI-H1299 Cell Line | EDJ-KZ103 | Human | 79065 | Details Get a Quote |
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