ATG10: Autophagy Related 10

Key E2-like enzyme in the ATG12 conjugation system essential for autophagosome formation

Gene Information Card

Symbol ATG10
Full Name Autophagy Related 10
Gene Type Protein coding
Chromosomal Location 5q14.1
NCBI Gene ID 83734 ncbi.nlm.nih.gov/gene/83734
Ensembl ID ENSG00000152348
UniProt ID Q9H0Y0
OMIM ID 610800
HGNC ID 20315
Aliases APG10, APG10L, pp12606

Description

ATG10 (Autophagy Related 10) encodes an E2-like enzyme that catalyzes the conjugation of ATG12 to ATG5, a critical step in autophagosome elongation. This protein is essential for autophagy, a lysosomal degradation pathway that removes damaged organelles and protein aggregates. ATG10 functions as a ubiquitin-like conjugating enzyme, forming a thioester intermediate with ATG12 before transferring it to ATG5. The ATG12-ATG5 conjugate then associates with ATG16L1 to form a complex that promotes LC3 lipidation. ATG10 is widely expressed and its dysfunction is linked to neurodegenerative disorders, cancer, and inflammatory diseases.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Crohn disease Impaired autophagy due to ATG10 variants may disrupt clearance of intracellular bacteria and immune regulation ClinVar, NCBI
Breast cancer Altered ATG10 expression affects autophagy-mediated tumor suppression or survival COSMIC, NCBI
Colorectal cancer ATG10 mutations may influence autophagy-dependent cell death and chemoresistance COSMIC, NCBI

Expression Profile

Tissue Expression
Tissue nTPM level
Brain 8.2 Medium
Liver 7.5 Medium
Kidney 6.9 Medium
Heart 5.8 Low
Lung 6.1 Low
Cell Line Expression
Cell Line nTPM Notes
HEK 293 9.3 Embryonic kidney cells
HeLa 8.7 Cervical cancer cells
HepG2 7.8 Liver cancer cells
A549 6.5 Lung cancer cells
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.484C>T (p.Arg162Trp) Missense 0.01% Unknown functional impact
c.1003G>A (p.Gly335Ser) Missense 0.005% Reported in Crohn disease
c.1246C>T (p.Arg416*) Nonsense <0.001% Predicted loss of function
Mutation functional classification

Loss of Function (LOF)

Nonsense and frameshift mutations that truncate the protein or disrupt the active site cysteine (Cys165) impair ATG12 conjugation and autophagy.

Gain of Function (GOF)

No confirmed gain-of-function mutations reported.

Dominant Negative (DN)

Missense mutations in the catalytic domain may interfere with wild-type ATG10 function, but evidence is limited.

Gene Ontology (GO)

• photoreceptor activity (GO:0009881) • Atg8 ligase activity (GO:0019776)
• Atg12 conjugating enzyme activity (GO:0019777) • autophagy (GO:0006914)
• late endosome to vacuole transport via multivesicular body sorting pathway (GO:0044805)

Pathways

• Autophagy - animal (KEGG: hsa04140)
• Regulation of autophagy (Reactome: R-HSA-1632852)
• LC3/GABARAP conjugation (Reactome: R-HSA-5672003)

Protein Summary

ATG10 is a 278-amino acid protein (UniProt Q9H0Y0) belonging to the ubiquitin-conjugating enzyme family. It contains a conserved active site cysteine (Cys165) that forms a thioester intermediate with ATG12. The protein is predominantly cytoplasmic and localizes to the phagophore assembly site. Structural studies reveal a canonical UBC fold with an extended N-terminal region. ATG10 interacts directly with ATG12 and ATG5, and its activity is essential for autophagosome membrane expansion. Post-translational modifications include phosphorylation, which may regulate its stability and function.

Related Products

Product name Cat.No. Species Gene ID
ATG101 Knockout HEK293 Cell Line EDJ-KQ1103 Human 60673 Details Get a Quote
ATG10 Knockout HEK293 Cell Line EDJ-KQ12470 Human 83734 Details Get a Quote
ATG10 Knockout A-549 Cell Line EDJ-KQ41416 Human 83734 Details Get a Quote
ATG10 Knockout HCT 116 Cell Line EDJ-KQ41417 Human 83734 Details Get a Quote
ATG10 Knockout HeLa Cell Line EDJ-KQ41418 Human 83734 Details Get a Quote
ATG101 Knockout A-549 Cell Line EDJ-KQ20281 Human 60673 Details Get a Quote
ATG101 Knockout HCT 116 Cell Line EDJ-KQ20282 Human 60673 Details Get a Quote
ATG101 Knockout HeLa Cell Line EDJ-KQ20283 Human 60673 Details Get a Quote
ATG10 Knockout K-562 Cell Line EDJ-KZ558 Human 83734 Details Get a Quote
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