ARSA Gene (Arylsulfatase A): Function, Mutations, and Associated Diseases

Comprehensive genomic and proteomic information for ARSA, including expression, variants, and clinical significance.

Gene Information Card

Symbol ARSA
Full Name Arylsulfatase A
Gene Type Protein coding
Chromosomal Location 22q13.33
NCBI Gene ID 410 ncbi.nlm.nih.gov/gene/410
Ensembl ID ENSG00000100299
UniProt ID P15289
OMIM ID 607574
HGNC ID 713
Aliases MLD, ASA, TISP73

Description

The ARSA gene encodes arylsulfatase A, a lysosomal enzyme that catalyzes the hydrolysis of cerebroside sulfate (sulfatide) to cerebroside and sulfate. This enzyme is essential for the degradation of sulfatides, which are major components of myelin. Mutations in ARSA lead to a deficiency of arylsulfatase A activity, causing accumulation of sulfatides in the nervous system and other tissues, resulting in metachromatic leukodystrophy (MLD), a progressive demyelinating disease. The gene is located on chromosome 22q13.33 and spans approximately 3 kb with 8 exons. Alternative splicing produces multiple transcript variants, but the main isoform is a 507-amino acid protein that undergoes post-translational modifications for lysosomal targeting and activation.

Disease Associations

Disease category Pathophysiological mechanism Genomic evidence
Metachromatic Leukodystrophy (MLD) Loss-of-function mutations in ARSA lead to deficiency of arylsulfatase A, causing accumulation of sulfatides in oligodendrocytes and Schwann cells, leading to demyelination of the central and peripheral nervous system. ClinVar, OMIM
Multiple Sulfatase Deficiency (MSD) Mutations in SUMF1 (not ARSA) cause MSD, but ARSA activity is also reduced due to impaired formylglycine modification, leading to combined sulfatase deficiencies. OMIM
ARSA deficiency without MLD (pseudodeficiency) Certain ARSA polymorphisms (e.g., c.1055A>G, p.Asn350Ser) reduce enzyme activity in vitro but do not cause MLD; however, they may be associated with neuropsychiatric symptoms in some cases. ClinVar, literature

Expression Profile

Tissue Expression
Tissue nTPM level
Kidney 17.2 Medium
Liver 15.8 Medium
Brain 12.5 Medium
Lung 10.3 Low
Heart 8.9 Low
Spleen 7.6 Low
Cell Line Expression
Cell Line nTPM Notes
HepG2 22.1 Hepatocellular carcinoma cell line; high expression
A549 14.3 Lung carcinoma; moderate expression
SH-SY5Y 12.8 Neuroblastoma; moderate expression
MCF7 9.5 Breast adenocarcinoma; low expression
K562 6.2 Chronic myelogenous leukemia; low expression
Data source:Human Protein Atlas(proteinatlas.org)

Mutations & Variants

Hotspot Mutations
Variant Type Frequency Functional Description
c.459C>A (p.Cys154Ter) Nonsense Rare (found in MLD patients) Premature stop codon; loss of enzyme activity
c.1283C>T (p.Pro428Leu) Missense Common in late-onset MLD Reduced enzyme activity; protein misfolding
c.1055A>G (p.Asn350Ser) Missense Pseudodeficiency allele (common in general population) Reduced activity in vitro but not disease-causing alone
c.542T>C (p.Ile181Thr) Missense Rare Impaired catalytic activity; associated with MLD
c.862A>G (p.Thr288Ala) Missense Rare Decreased enzyme stability; MLD phenotype
Mutation functional classification

Loss of Function (LOF)

Most ARSA mutations that cause MLD are loss-of-function, leading to reduced or absent arylsulfatase A activity. This results in sulfatide accumulation and demyelination.

Gain of Function (GOF)

No gain-of-function mutations have been reported for ARSA. The enzyme's activity is typically reduced or abolished in disease-associated variants.

Dominant Negative (DN)

ARSA is not known to exhibit dominant-negative effects. MLD is inherited in an autosomal recessive manner, requiring biallelic mutations.

Pathways

Sphingolipid metabolism (Reactome: R-HSA-1660662)
Sulfatide catabolism (Reactome: R-HSA-1660662)
Lysosomal degradation (Reactome: R-HSA-1660662)

Protein Summary

Arylsulfatase A (ARSA) is a 507-amino acid glycoprotein that localizes to lysosomes. It is synthesized as a preproprotein and undergoes proteolytic cleavage to form the mature enzyme. The protein requires post-translational modification of a cysteine residue to formylglycine (FGly) for catalytic activity. ARSA hydrolyzes sulfatide (3-O-sulfogalactosylceramide) to galactosylceramide and sulfate. Deficiency of ARSA leads to accumulation of sulfatides, particularly in the white matter of the brain, causing demyelination and neurological symptoms. The enzyme also acts on other sulfated substrates, such as ascorbic acid sulfate and UDP-N-acetylgalactosamine-4-sulfate. ARSA exists as a homodimer and requires metal ions (Ca2+) for stability. Mutations affecting the active site, dimerization, or lysosomal targeting result in MLD.

Related Products

Product name Cat.No. Species Gene ID
ARSA Knockout HEK293 Cell Line EDJ-KQ4095 Human 410 Details Get a Quote
ARSA Knockout A-549 Cell Line EDJ-KQ25144 Human 410 Details Get a Quote
ARSA Knockout HCT 116 Cell Line EDJ-KQ26480 Human 410 Details Get a Quote
ARSA Knockout HeLa Cell Line EDJ-KQ26481 Human 410 Details Get a Quote
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