ARSA Gene (Arylsulfatase A): Function, Mutations, and Associated Diseases
Comprehensive genomic and proteomic information for ARSA, including expression, variants, and clinical significance.
Gene Information Card
| Symbol | ARSA |
|---|---|
| Full Name | Arylsulfatase A |
| Gene Type | Protein coding |
| Chromosomal Location | 22q13.33 |
| NCBI Gene ID | 410 ncbi.nlm.nih.gov/gene/410 |
| Ensembl ID | ENSG00000100299 |
| UniProt ID | P15289 |
| OMIM ID | 607574 |
| HGNC ID | 713 |
| Aliases | MLD, ASA, TISP73 |
Description
The ARSA gene encodes arylsulfatase A, a lysosomal enzyme that catalyzes the hydrolysis of cerebroside sulfate (sulfatide) to cerebroside and sulfate. This enzyme is essential for the degradation of sulfatides, which are major components of myelin. Mutations in ARSA lead to a deficiency of arylsulfatase A activity, causing accumulation of sulfatides in the nervous system and other tissues, resulting in metachromatic leukodystrophy (MLD), a progressive demyelinating disease. The gene is located on chromosome 22q13.33 and spans approximately 3 kb with 8 exons. Alternative splicing produces multiple transcript variants, but the main isoform is a 507-amino acid protein that undergoes post-translational modifications for lysosomal targeting and activation.
Disease Associations
| Disease category | Pathophysiological mechanism | Genomic evidence |
|---|---|---|
| Metachromatic Leukodystrophy (MLD) | Loss-of-function mutations in ARSA lead to deficiency of arylsulfatase A, causing accumulation of sulfatides in oligodendrocytes and Schwann cells, leading to demyelination of the central and peripheral nervous system. | ClinVar, OMIM |
| Multiple Sulfatase Deficiency (MSD) | Mutations in SUMF1 (not ARSA) cause MSD, but ARSA activity is also reduced due to impaired formylglycine modification, leading to combined sulfatase deficiencies. | OMIM |
| ARSA deficiency without MLD (pseudodeficiency) | Certain ARSA polymorphisms (e.g., c.1055A>G, p.Asn350Ser) reduce enzyme activity in vitro but do not cause MLD; however, they may be associated with neuropsychiatric symptoms in some cases. | ClinVar, literature |
Expression Profile
Tissue Expression
| Tissue | nTPM | level |
|---|---|---|
| Kidney | 17.2 | Medium |
| Liver | 15.8 | Medium |
| Brain | 12.5 | Medium |
| Lung | 10.3 | Low |
| Heart | 8.9 | Low |
| Spleen | 7.6 | Low |
Cell Line Expression
| Cell Line | nTPM | Notes |
|---|---|---|
| HepG2 | 22.1 | Hepatocellular carcinoma cell line; high expression |
| A549 | 14.3 | Lung carcinoma; moderate expression |
| SH-SY5Y | 12.8 | Neuroblastoma; moderate expression |
| MCF7 | 9.5 | Breast adenocarcinoma; low expression |
| K562 | 6.2 | Chronic myelogenous leukemia; low expression |
Data source:Human Protein Atlas(proteinatlas.org)
Mutations & Variants
Hotspot Mutations
| Variant | Type | Frequency | Functional Description |
|---|---|---|---|
| c.459C>A (p.Cys154Ter) | Nonsense | Rare (found in MLD patients) | Premature stop codon; loss of enzyme activity |
| c.1283C>T (p.Pro428Leu) | Missense | Common in late-onset MLD | Reduced enzyme activity; protein misfolding |
| c.1055A>G (p.Asn350Ser) | Missense | Pseudodeficiency allele (common in general population) | Reduced activity in vitro but not disease-causing alone |
| c.542T>C (p.Ile181Thr) | Missense | Rare | Impaired catalytic activity; associated with MLD |
| c.862A>G (p.Thr288Ala) | Missense | Rare | Decreased enzyme stability; MLD phenotype |
Mutation functional classification
Loss of Function (LOF)
Most ARSA mutations that cause MLD are loss-of-function, leading to reduced or absent arylsulfatase A activity. This results in sulfatide accumulation and demyelination.
Gain of Function (GOF)
No gain-of-function mutations have been reported for ARSA. The enzyme's activity is typically reduced or abolished in disease-associated variants.
Dominant Negative (DN)
ARSA is not known to exhibit dominant-negative effects. MLD is inherited in an autosomal recessive manner, requiring biallelic mutations.
View complete mutation data:
Gene Ontology (GO)
Pathways
• Sphingolipid metabolism (Reactome: R-HSA-1660662)
• Sulfatide catabolism (Reactome: R-HSA-1660662)
• Lysosomal degradation (Reactome: R-HSA-1660662)
Protein Summary
Arylsulfatase A (ARSA) is a 507-amino acid glycoprotein that localizes to lysosomes. It is synthesized as a preproprotein and undergoes proteolytic cleavage to form the mature enzyme. The protein requires post-translational modification of a cysteine residue to formylglycine (FGly) for catalytic activity. ARSA hydrolyzes sulfatide (3-O-sulfogalactosylceramide) to galactosylceramide and sulfate. Deficiency of ARSA leads to accumulation of sulfatides, particularly in the white matter of the brain, causing demyelination and neurological symptoms. The enzyme also acts on other sulfated substrates, such as ascorbic acid sulfate and UDP-N-acetylgalactosamine-4-sulfate. ARSA exists as a homodimer and requires metal ions (Ca2+) for stability. Mutations affecting the active site, dimerization, or lysosomal targeting result in MLD.
Related Services
Related Products
| Product name | Cat.No. | Species | Gene ID | |
|---|---|---|---|---|
| ARSA Knockout HEK293 Cell Line | EDJ-KQ4095 | Human | 410 | Details Get a Quote |
| ARSA Knockout A-549 Cell Line | EDJ-KQ25144 | Human | 410 | Details Get a Quote |
| ARSA Knockout HCT 116 Cell Line | EDJ-KQ26480 | Human | 410 | Details Get a Quote |
| ARSA Knockout HeLa Cell Line | EDJ-KQ26481 | Human | 410 | Details Get a Quote |
Displaying Records 1 To 4 Of 4 Records